Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03920_001 | Banana | nucleus | 74.84 | 87.5 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 69.81 | 76.03 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 85.53 | 69.74 |
| Os09t0480700-01 | Rice | nucleus | 45.28 | 42.86 |
| EES15444 | Sorghum | nucleus | 51.57 | 40.8 |
| Zm00001d020874_P001 | Maize | extracellular | 50.94 | 40.5 |
| EER96945 | Sorghum | nucleus | 50.31 | 39.6 |
| Zm00001d031310_P001 | Maize | nucleus | 49.06 | 39.0 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 49.06 | 38.42 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 49.06 | 38.42 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 47.8 | 38.19 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 47.8 | 38.19 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 47.8 | 38.19 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 48.43 | 37.93 |
| Os08t0496500-01 | Rice | nucleus | 48.43 | 37.56 |
| Zm00001d052838_P001 | Maize | nucleus | 47.17 | 37.13 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 51.57 | 36.61 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 51.57 | 34.6 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 55.97 | 33.97 |
| Solyc01g079870.2.1 | Tomato | nucleus | 53.46 | 32.95 |
| PGSC0003DMT400023211 | Potato | nucleus | 52.83 | 32.81 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 52.83 | 32.56 |
| PGSC0003DMT400008660 | Potato | nucleus | 51.57 | 32.54 |
| CDX93525 | Canola | nucleus | 44.65 | 32.27 |
| Bra018589.1-P | Field mustard | nucleus | 44.65 | 32.27 |
| AT1G54830.3 | Thale cress | nucleus | 44.03 | 32.26 |
| KRH33966 | Soybean | nucleus | 53.46 | 32.2 |
| KRG96853 | Soybean | nucleus | 52.2 | 32.17 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 38.36 | 32.11 |
| GSMUA_Achr10P... | Banana | nucleus | 38.99 | 31.96 |
| Bra030749.1-P | Field mustard | nucleus | 43.4 | 31.65 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 52.2 | 31.56 |
| Bra031651.1-P | Field mustard | nucleus | 44.03 | 30.7 |
| CDY06341 | Canola | nucleus | 44.03 | 30.7 |
| KRG92828 | Soybean | nucleus | 50.31 | 30.42 |
| AT1G08970.4 | Thale cress | nucleus | 44.03 | 30.3 |
| GSMUA_Achr11P... | Banana | cytosol | 47.8 | 29.92 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 19.5 | 29.52 |
| HORVU7Hr1G048760.3 | Barley | plastid | 47.8 | 29.23 |
| KRH43409 | Soybean | nucleus | 36.48 | 28.29 |
| CDY22654 | Canola | cytosol | 44.03 | 27.56 |
| GSMUA_Achr11P... | Banana | cytosol | 50.94 | 26.38 |
| CDY31119 | Canola | nucleus | 30.82 | 25.65 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 19.5 | 24.6 |
| KRH20891 | Soybean | nucleus | 36.48 | 23.87 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 41.51 | 23.66 |
| CDY32142 | Canola | mitochondrion, nucleus | 43.4 | 23.31 |
| KRH20896 | Soybean | nucleus | 26.42 | 21.88 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 44.03 | 21.41 |
| KRH20893 | Soybean | nucleus | 35.22 | 20.97 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 45.91 | 10.7 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P11990_001 | EnsemblPlants:GSMUA_Achr3T11990_001 | EnsemblPlantsGene:GSMUA_Achr3G11990_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI00029598AE | UniProt:M0SDW6 | MapMan:35.1 | : |
Description
Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr3G11990_001]
Coordinates
chr3:-:8905434..8906107
Molecular Weight (calculated)
18006.4 Da
IEP (calculated)
6.673
GRAVY (calculated)
-0.530
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPGHTTPP VMGVATGVPY AAAAGGGPYQ AYQHLYHQQQ QQQQQQLQLF WADQYREIEQ TTDFKNHSLP LARIKKIMKA DEDRRTLQKN DIAAAISRTD
101: VFDFLIDIVP REEGKEDVAR PLGGPPTDPM SYYYAQHSIS NVLWAKLILR TCLSCGQFL
101: VFDFLIDIVP REEGKEDVAR PLGGPPTDPM SYYYAQHSIS NVLWAKLILR TCLSCGQFL
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.