CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	90.31	98.31
KRG92828	Soybean	nucleus	85.66	84.03
KRH33966	Soybean	nucleus	84.11	82.2
Os09t0480700-01	Rice	nucleus	39.15	60.12
Zm00001d020874_P001	Maize	extracellular	44.19	57.0
GSMUA_Achr4P03920_001	Banana	nucleus	29.84	56.62
KRH13746	Soybean	nucleus	58.14	55.97
EER96945	Sorghum	nucleus	43.8	55.94
KRH43702	Soybean	nucleus	58.14	55.35
TraesCS7A01G239500.1	Wheat	nucleus	41.86	54.27
TraesCS7B01G135000.1	Wheat	nucleus	41.86	54.27
TraesCS7D01G237100.1	Wheat	nucleus	41.86	54.27
TraesCS5B01G255900.1	Wheat	nucleus	42.25	53.69
TraesCS5A01G256500.1	Wheat	nucleus	42.25	53.69
KRH63772	Soybean	nucleus	46.51	53.33
TraesCS5D01G265000.1	Wheat	nucleus	41.86	53.2
KRH54177	Soybean	nucleus	46.51	52.4
EES15444	Sorghum	nucleus	40.7	52.24
GSMUA_Achr3P11990_001	Banana	nucleus	32.17	52.2
Zm00001d031310_P001	Maize	nucleus	39.92	51.5
Os08t0496500-01	Rice	nucleus	40.7	51.22
Zm00001d052838_P001	Maize	nucleus	39.92	50.99
GSMUA_Achr4P13170_001	Banana	nucleus	28.68	50.68
KRH22187	Soybean	mitochondrion	21.71	45.53
KRH43409	Soybean	nucleus	35.66	44.88
KRH27143	Soybean	mitochondrion	20.93	43.9
GSMUA_Achr1P19420_001	Banana	nucleus	31.78	42.05
HORVU7Hr1G048760.3	Barley	plastid	42.25	41.92
KRH20891	Soybean	nucleus	36.82	39.09
KRH20896	Soybean	nucleus	28.68	38.54
KRH20893	Soybean	nucleus	37.6	36.33
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.88	32.26
KRH70416	Soybean	cytosol	15.12	26.9
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	53.1	20.09

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100527803	MapMan:15.5.51.3	EMBL:ACUP02012166	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_19G236400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K7MZZ0	ProteinID:KRG96851.1
ProteinID:KRG96852.1	EnsemblPlants:KRG96853	ProteinID:KRG96853	ProteinID:KRG96853.1	PFAM:PF00808	PANTHER:PTHR10252
PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI000152A2ED	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:48540382..48543383

Molecular Weight (calculated)

28741.2 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.539

Length

258 amino acids

Sequence
(BLAST)

001: MDHQGHSQNP SMGVVGSGAQ LAYGSNPYQP GQITGPPGSV VTSVGTIQST PAGAQLGQHQ LAYQHIHQQQ QHQLQQQLQQ FWSNQYQEIE KVTDFKNHSL
101: PLARIKKIMK ADEDVRMISA EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASIPR GTMPVAGPAD
201: ALPYCYMPPQ HASQVGAAGV IMGKPVMDPN MYAQQSHPYM APQMWPQPPD QRQSSPEH

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.