CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92828	Soybean	nucleus	92.8	93.16
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	76.14	84.81
KRG96853	Soybean	nucleus	82.2	84.11
GSMUA_Achr4P03920_001	Banana	nucleus	30.3	58.82
Os09t0480700-01	Rice	nucleus	36.74	57.74
KRH13746	Soybean	nucleus	54.92	54.1
Zm00001d020874_P001	Maize	extracellular	40.91	54.0
KRH43702	Soybean	nucleus	54.92	53.51
GSMUA_Achr3P11990_001	Banana	nucleus	32.2	53.46
GSMUA_Achr4P13170_001	Banana	nucleus	29.55	53.42
EER96945	Sorghum	nucleus	40.53	52.97
KRH63772	Soybean	nucleus	44.7	52.44
TraesCS7D01G237100.1	Wheat	nucleus	39.39	52.26
TraesCS7B01G135000.1	Wheat	nucleus	39.39	52.26
TraesCS7A01G239500.1	Wheat	nucleus	39.39	52.26
TraesCS5D01G265000.1	Wheat	nucleus	40.15	52.22
TraesCS5B01G255900.1	Wheat	nucleus	40.15	52.22
TraesCS5A01G256500.1	Wheat	nucleus	40.15	52.22
KRH54177	Soybean	nucleus	45.08	51.97
Os08t0496500-01	Rice	nucleus	39.39	50.73
Zm00001d052838_P001	Maize	nucleus	38.26	50.0
EES15444	Sorghum	nucleus	37.88	49.75
Zm00001d031310_P001	Maize	nucleus	37.5	49.5
KRH22187	Soybean	mitochondrion	21.59	46.34
KRH27143	Soybean	mitochondrion	20.83	44.72
KRH43409	Soybean	nucleus	33.33	42.93
GSMUA_Achr1P19420_001	Banana	nucleus	31.44	42.56
HORVU7Hr1G048760.3	Barley	plastid	39.02	39.62
KRH20891	Soybean	nucleus	35.98	39.09
KRH20896	Soybean	nucleus	28.03	38.54
KRH20893	Soybean	nucleus	35.98	35.58
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.33	31.54
KRH70416	Soybean	cytosol	14.77	26.9
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	51.89	20.09

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100776494	MapMan:15.5.51.3	EMBL:ACUP02006566	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_10G155900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K7LJM0	ProteinID:KRH33965.1
EnsemblPlants:KRH33966	ProteinID:KRH33966	ProteinID:KRH33966.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75
SUPFAM:SSF47113	UniParc:UPI000233CF21	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:39024935..39026590

Molecular Weight (calculated)

29535.1 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.680

Length

264 amino acids

Sequence
(BLAST)

001: MDHQGHGHGH GQNPSMGVVG NGPQFPYGSN PYQASHMTGS PGMVVASPGT IQSTGQPPST QLGQHQLAYQ HMHQQQQQQL RQRLQAFWAN QYQEIEKVTD
101: FKNHSLPLAR IKKIMKADED VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPREDLKDEV LASMPRGDVP
201: VTGPPEALPY CYMPPQQVGA AGVMMGNKPV MDPYAQQTHP YNMAPQLWPQ PPPPPEQQQS SPDQ

Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.