Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0480700-01 | Rice | nucleus | 65.85 | 80.36 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 36.59 | 55.15 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 35.12 | 49.32 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 37.56 | 48.43 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 56.1 | 46.0 |
| Os02t0170500-01 | Rice | nucleus | 58.05 | 45.95 |
| CDX93525 | Canola | nucleus | 47.8 | 44.55 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 51.22 | 44.3 |
| Bra018589.1-P | Field mustard | nucleus | 47.32 | 44.09 |
| Bra030749.1-P | Field mustard | nucleus | 46.83 | 44.04 |
| Os04t0683400-00 | Rice | mitochondrion | 26.83 | 44.0 |
| AT1G54830.3 | Thale cress | nucleus | 45.85 | 43.32 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 55.12 | 43.13 |
| Solyc01g079870.2.1 | Tomato | nucleus | 54.15 | 43.02 |
| CDY06341 | Canola | nucleus | 47.8 | 42.98 |
| Bra031651.1-P | Field mustard | nucleus | 47.8 | 42.98 |
| PGSC0003DMT400023211 | Potato | nucleus | 53.66 | 42.97 |
| AT1G08970.4 | Thale cress | nucleus | 47.8 | 42.42 |
| Os03t0251350-00 | Rice | nucleus | 50.73 | 42.28 |
| PGSC0003DMT400008660 | Potato | nucleus | 51.71 | 42.06 |
| KRG96853 | Soybean | nucleus | 51.22 | 40.7 |
| CDY31119 | Canola | nucleus | 37.56 | 40.31 |
| KRH43409 | Soybean | nucleus | 40.0 | 40.0 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 51.22 | 39.92 |
| KRG92828 | Soybean | nucleus | 50.73 | 39.54 |
| KRH33966 | Soybean | nucleus | 50.73 | 39.39 |
| CDY22654 | Canola | cytosol | 48.29 | 38.98 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 36.1 | 37.95 |
| KRH20896 | Soybean | nucleus | 34.63 | 36.98 |
| CDY32142 | Canola | mitochondrion, nucleus | 46.83 | 32.43 |
| KRH20891 | Soybean | nucleus | 38.05 | 32.1 |
| Os08t0206500-00 | Rice | nucleus | 40.98 | 29.79 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 47.32 | 29.66 |
| KRH20893 | Soybean | nucleus | 38.05 | 29.21 |
| Os01t0102400-01 | Rice | nucleus | 24.88 | 12.11 |
| Os01t0580400-01 | Rice | nucleus | 24.88 | 11.54 |
| Os10t0191900-00 | Rice | nucleus | 18.54 | 11.34 |
| Os05t0304800-01 | Rice | nucleus | 18.05 | 11.31 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:4345928 | EMBL:AK108510 | ProteinID:BAA81759.1 | ProteinID:BAD10129.1 |
| ProteinID:BAF24050.1 | ProteinID:BAF64452.1 | ProteinID:BAT06066.1 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| EnsemblPlantsGene:Os08g0496500 | EnsemblPlants:Os08t0496500-01 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF46 | UniProt:Q9XE33 |
| SUPFAM:SSF47113 | UniParc:UPI00000A209B | RefSeq:XP_015648381.1 | SEG:seg | : | : |
Description
HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEXHistone-fold domain containing protein. (Os08t0496500-01)
Coordinates
chr8:+:24517598..24518559
Molecular Weight (calculated)
21910.1 Da
IEP (calculated)
5.930
GRAVY (calculated)
-0.231
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKSTTPPP PPPPPVLGAP VPYPPAGAYP PPVGPYAHAP PLYAPPPPAA AAASAAATAA SQQAAAAQLQ NFWAEQYREI EHTTDFKNHN LPLARIKKIM
101: KADEDVRMIA AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDE AKDAEAAAAV AAGIPHPAAG LPATDPMAYY
201: YVQPQ
101: KADEDVRMIA AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDE AKDAEAAAAV AAGIPHPAAG LPATDPMAYY
201: YVQPQ
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.