Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031651.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| AT1G08970.4 | Thale cress | nucleus | 95.61 | 94.37 |
| CDX93525 | Canola | nucleus | 88.16 | 91.36 |
| CDY31119 | Canola | nucleus | 73.68 | 87.96 |
| CDY22654 | Canola | cytosol | 88.6 | 79.53 |
| CDY32142 | Canola | mitochondrion, nucleus | 85.53 | 65.88 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 93.42 | 65.14 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 71.49 | 61.98 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 68.86 | 59.92 |
| PGSC0003DMT400008660 | Potato | nucleus | 65.79 | 59.52 |
| PGSC0003DMT400023211 | Potato | nucleus | 66.67 | 59.38 |
| Solyc01g079870.2.1 | Tomato | nucleus | 67.11 | 59.3 |
| CDX67737 | Canola | nucleus | 46.93 | 56.91 |
| Os09t0480700-01 | Rice | nucleus | 41.23 | 55.95 |
| CDY08084 | Canola | nucleus | 50.44 | 52.04 |
| CDY05857 | Canola | nucleus | 50.44 | 52.04 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 44.74 | 51.26 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 44.74 | 51.26 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 45.61 | 51.23 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 45.61 | 51.23 |
| Zm00001d020874_P001 | Maize | extracellular | 44.74 | 51.0 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 44.3 | 50.75 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 45.18 | 50.74 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 30.26 | 50.74 |
| EER96945 | Sorghum | nucleus | 44.74 | 50.49 |
| Zm00001d052838_P001 | Maize | nucleus | 43.42 | 49.01 |
| EES15444 | Sorghum | nucleus | 42.98 | 48.76 |
| Zm00001d031310_P001 | Maize | nucleus | 42.54 | 48.5 |
| Os08t0496500-01 | Rice | nucleus | 42.98 | 47.8 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 29.39 | 45.89 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 30.7 | 44.03 |
| CDY66668 | Canola | plastid | 50.44 | 42.12 |
| CDX84419 | Canola | plastid | 52.19 | 42.05 |
| CDY48146 | Canola | plastid | 47.81 | 41.29 |
| HORVU7Hr1G048760.3 | Barley | plastid | 44.74 | 39.23 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 32.89 | 38.46 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 35.53 | 29.03 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 49.12 | 16.42 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | ProteinID:AHJ80506.1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY06341 | ProteinID:CDY06341 |
| ProteinID:CDY06341.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00122272001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF75 | SUPFAM:SSF47113 | UniParc:UPI0001B36BFC | GO:W8EDQ7 |
| UniProt:W8EDQ7 | SEG:seg | : | : | : | : |
Description
BnaA09g48620DTranscription factor subunit NF-YC9A [Source:UniProtKB/TrEMBL;Acc:W8EDQ7]
Coordinates
chrLK031968:+:880076..881566
Molecular Weight (calculated)
25423.0 Da
IEP (calculated)
4.889
GRAVY (calculated)
-0.665
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQEHAQSG AMNYGSNPYQ TNPMTTTSAG PAAPPGQLGF HQIHQQQQQQ QLAQQLQVFW ENQFKEIEKT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA
101: PVVFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGT VPEAAAAGYP YGYLPAGTAP IGNPGMVMGN
201: PGGAYPPNPY MGQPMWQQQG PDQPDQEN
101: PVVFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGT VPEAAAAGYP YGYLPAGTAP IGNPGMVMGN
201: PGGAYPPNPY MGQPMWQQQG PDQPDQEN
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.