Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66668 | Canola | plastid | 95.41 | 98.9 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 87.28 | 90.81 |
| CDY05857 | Canola | nucleus | 68.9 | 88.24 |
| CDY08084 | Canola | nucleus | 68.2 | 87.33 |
| AT5G63470.1 | Thale cress | plastid | 77.03 | 87.2 |
| Solyc06g072040.1.1 | Tomato | nucleus | 61.48 | 75.0 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 60.42 | 74.35 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 60.07 | 73.91 |
| KRH54177 | Soybean | nucleus | 58.66 | 72.49 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 64.66 | 72.05 |
| KRH63772 | Soybean | nucleus | 56.89 | 71.56 |
| CDY48146 | Canola | plastid | 59.72 | 64.02 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 47.7 | 56.02 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 47.7 | 55.79 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 47.7 | 55.79 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 47.35 | 55.6 |
| Os03t0251350-00 | Rice | nucleus | 48.06 | 55.28 |
| CDX67737 | Canola | nucleus | 36.4 | 54.79 |
| Zm00001d028432_P001 | Maize | nucleus | 46.64 | 53.88 |
| KXG39763 | Sorghum | nucleus | 46.64 | 53.44 |
| CDX93525 | Canola | nucleus | 41.34 | 53.18 |
| CDY06341 | Canola | nucleus | 42.05 | 52.19 |
| CDY31119 | Canola | nucleus | 34.28 | 50.79 |
| CDY22654 | Canola | cytosol | 40.28 | 44.88 |
| CDY32142 | Canola | mitochondrion, nucleus | 40.64 | 38.85 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 42.4 | 36.7 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | GO:A0A078D7S2 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDX84419 | ProteinID:CDX84419 |
| ProteinID:CDX84419.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00141624001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | SUPFAM:SSF47113 | UniParc:UPI0004EDDCED | SEG:seg |
Description
BnaC03g50810D
Coordinates
chrLK031837:-:1024977..1026245
Molecular Weight (calculated)
30822.9 Da
IEP (calculated)
5.625
GRAVY (calculated)
-0.292
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNKQQPPP PPTSVYPPAS AATAIPPPPP PSGSTPIIPG GGASYHHLLQ QQLQQLQMFW SYQRKEIEQV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA
101: PILFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREEIKE EEEAALGSMV AAPAVSGVPY YYPPMGHPAV PGGMMIGRPA
201: MDPSGVYAQP PSQAWQSVWQ NSAAGDDVSY GSGGSSGGHG NLDNQGNVPC LKTSNELALI GLKCSSDMLT LRSLEGFFRC CLV
101: PILFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREEIKE EEEAALGSMV AAPAVSGVPY YYPPMGHPAV PGGMMIGRPA
201: MDPSGVYAQP PSQAWQSVWQ NSAAGDDVSY GSGGSSGGHG NLDNQGNVPC LKTSNELALI GLKCSSDMLT LRSLEGFFRC CLV
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.