CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030749.1-P	Field mustard	nucleus	70.95	96.33
CDY31119	Canola	nucleus	61.15	94.76
CDY06341	Canola	nucleus	65.88	85.53
CDX93525	Canola	nucleus	61.82	83.18
CDY22654	Canola	cytosol	59.12	68.9
CDX95019	Canola	cytosol, mitochondrion, nucleus	70.27	63.61
VIT_14s0128g00250.t01	Wine grape	nucleus	53.04	59.7
VIT_05s0020g02790.t01	Wine grape	nucleus	51.69	58.4
PGSC0003DMT400008660	Potato	nucleus	48.99	57.54
CDX67737	Canola	nucleus	36.15	56.91
PGSC0003DMT400023211	Potato	nucleus	48.99	56.64
Solyc01g079870.2.1	Tomato	nucleus	49.32	56.59
Os09t0480700-01	Rice	nucleus	31.76	55.95
CDY08084	Canola	nucleus	37.5	50.23
CDY05857	Canola	nucleus	37.5	50.23
GSMUA_Achr4P03920_001	Banana	nucleus	22.97	50.0
TraesCS7D01G237100.1	Wheat	nucleus	33.45	49.75
TraesCS7B01G135000.1	Wheat	nucleus	33.45	49.75
TraesCS7A01G239500.1	Wheat	nucleus	33.45	49.75
Zm00001d020874_P001	Maize	extracellular	33.45	49.5
TraesCS5B01G255900.1	Wheat	nucleus	33.78	49.26
TraesCS5A01G256500.1	Wheat	nucleus	33.78	49.26
EER96945	Sorghum	nucleus	33.45	49.01
TraesCS5D01G265000.1	Wheat	nucleus	33.45	48.77
Zm00001d052838_P001	Maize	nucleus	32.43	47.52
EES15444	Sorghum	nucleus	32.09	47.26
Zm00001d031310_P001	Maize	nucleus	31.76	47.0
Os08t0496500-01	Rice	nucleus	32.43	46.83
GSMUA_Achr4P13170_001	Banana	nucleus	22.64	45.89
GSMUA_Achr3P11990_001	Banana	nucleus	23.31	43.4
CDY66668	Canola	plastid	37.5	40.66
CDX84419	Canola	plastid	38.85	40.64
CDY48146	Canola	plastid	36.15	40.53
HORVU7Hr1G048760.3	Barley	plastid	35.14	40.0
GSMUA_Achr1P19420_001	Banana	nucleus	25.0	37.95
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.03	28.67
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	37.16	16.13

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	GO:A0A078H3S3	UniProt:A0A078H3S3	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY32142
ProteinID:CDY32142	ProteinID:CDY32142.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00051514001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI0004EE29E4
SEG:seg	:	:	:	:	:

Description

BnaCnng06510DBnaCnng06510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3S3]

Coordinates

chrLK032288:+:76527..81032

Molecular Weight (calculated)

33275.1 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.462

Length

296 amino acids

Sequence
(BLAST)

001: MISLILVRKK RKAKAINKIT IDLPTLPHPR GSTSVFLGHQ LQILLAKPTP SESTHIIRRY RKASTLLLWL EDTLLSLFSK RMDQQEHGQS RAMNYGTNPY
101: QTGTVGPTAP SGQMAFHQQQ QLTQQLQVFW QNQFKEIEKT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFARACEM FILELTLRSW NHTEENKRRT
201: LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGT VPEASAAGYP YGYLPSGTAP VGNSGMVMGN PGSAYPPNPY MGQPIWQHQG PGQPDQ

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.