Factsheet for VIT_14s0128g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02790.t01	Wine grape	nucleus	76.81	77.1
Bra030749.1-P	Field mustard	nucleus	59.32	71.56
Bra031651.1-P	Field mustard	nucleus	61.98	71.49
CDY06341	Canola	nucleus	61.98	71.49
CDX93525	Canola	nucleus	59.7	71.36
Bra018589.1-P	Field mustard	nucleus	59.32	70.91
CDY31119	Canola	nucleus	51.33	70.68
AT1G08970.4	Thale cress	nucleus	61.98	70.56
AT1G54830.3	Thale cress	nucleus	57.79	70.05
CDY22654	Canola	cytosol	57.79	59.84
Os09t0480700-01	Rice	nucleus	37.26	58.33
GSMUA_Achr4P03920_001	Banana	nucleus	30.04	58.09
VIT_19s0085g00520.t01	Wine grape	cytosol	59.32	57.99
Zm00001d020874_P001	Maize	extracellular	41.83	55.0
TraesCS7D01G237100.1	Wheat	nucleus	41.06	54.27
TraesCS7B01G135000.1	Wheat	nucleus	41.06	54.27
TraesCS7A01G239500.1	Wheat	nucleus	41.06	54.27
EER96945	Sorghum	nucleus	41.44	53.96
TraesCS5A01G256500.1	Wheat	nucleus	41.06	53.2
TraesCS5B01G255900.1	Wheat	nucleus	41.06	53.2
TraesCS5D01G265000.1	Wheat	nucleus	41.06	53.2
CDY32142	Canola	mitochondrion, nucleus	59.7	53.04
GSMUA_Achr3P11990_001	Banana	nucleus	31.56	52.2
GSMUA_Achr4P13170_001	Banana	nucleus	28.9	52.05
Os08t0496500-01	Rice	nucleus	39.92	51.22
EES15444	Sorghum	nucleus	38.78	50.75
Zm00001d031310_P001	Maize	nucleus	38.02	50.0
CDX95019	Canola	cytosol, mitochondrion, nucleus	61.6	49.54
Zm00001d052838_P001	Maize	nucleus	38.02	49.51
VIT_02s0025g03770.t01	Wine grape	mitochondrion	20.91	47.41
VIT_17s0000g01130.t01	Wine grape	nucleus	44.87	46.46
HORVU7Hr1G048760.3	Barley	plastid	41.44	41.92
GSMUA_Achr1P19420_001	Banana	nucleus	30.42	41.03
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	32.7	30.82
VIT_14s0006g02320.t01	Wine grape	cytosol	14.45	29.46
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	50.57	19.5

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100258035	wikigene:100258035	MapMan:15.5.51.3	InterPro:CBFA_NFYB_domain	ProteinID:CCB59898
ProteinID:CCB59898.1	UniProt:F6HYY4	EMBL:FN596501	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100258035	wikigene:LOC100258035	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75
SUPFAM:SSF47113	TIGR:TC52789	TIGR:TC53247	UniParc:UPI0001984AB4	ArrayExpress:VIT_14s0128g00250	EnsemblPlantsGene:VIT_14s0128g00250
EnsemblPlants:VIT_14s0128g00250.t01	unigene:Vvi.1103	RefSeq:XP_002284851	RefSeq:XP_002284851.1	RefSeq:XP_003633639	RefSeq:XP_003633639.1
RefSeq:XP_010659833.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:2916855..2920905

Molecular Weight (calculated)

29246.7 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.597

Length

263 amino acids

Sequence
(BLAST)

001: MDHQGHGQTP VMGMAGSAAQ LPYGTNPYQH NQMGGTPTSG SVVTSVGTIQ SPGHPAGAQL AQHQLAYQHM HHQQQQQLQQ QLQSFWANQH QEIEKATDFK
101: NHSLPLARIK KIMKADEDVR MISAEAPVVF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP REDLKDEVLT SIPRGTMPVG
201: GASDTVPYYY MPAQHSPQVG TPGMIMGKPV MDPALYAQQP HPYMGQSMWQ SQAPQQEHSP SDS

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.