Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13746 | Soybean | nucleus | 79.18 | 79.48 |
| KRH43702 | Soybean | nucleus | 79.93 | 79.34 |
| AT1G56170.2 | Thale cress | nucleus | 56.13 | 75.88 |
| Bra003334.1-P | Field mustard | nucleus | 50.93 | 74.46 |
| CDX67737 | Canola | nucleus | 49.81 | 71.28 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 60.97 | 62.6 |
| GSMUA_Achr11P... | Banana | cytosol | 57.99 | 61.42 |
| KXG24590 | Sorghum | nucleus | 57.62 | 61.26 |
| Os02t0170500-01 | Rice | nucleus | 58.36 | 60.62 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 56.13 | 60.4 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 56.88 | 59.77 |
| Zm00001d046967_P001 | Maize | nucleus | 55.02 | 59.68 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 56.51 | 59.38 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 57.99 | 59.32 |
| Zm00001d036648_P001 | Maize | extracellular | 53.53 | 58.78 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 54.65 | 58.57 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 56.51 | 58.46 |
| EER88787 | Sorghum | nucleus | 54.65 | 57.65 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 53.9 | 56.42 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 53.16 | 55.86 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 52.79 | 55.25 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 51.3 | 53.08 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 56.88 | 52.58 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 47.21 | 50.0 |
| VIT_02s0025g03770.t01 | Wine grape | mitochondrion | 21.19 | 49.14 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 34.57 | 47.21 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 39.03 | 46.05 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 44.61 | 45.8 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 39.03 | 45.06 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 39.03 | 44.87 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 41.26 | 44.76 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 37.17 | 42.92 |
| KXG24666 | Sorghum | nucleus | 34.94 | 41.96 |
| Os08t0206500-00 | Rice | nucleus | 36.8 | 35.11 |
| VIT_14s0006g02320.t01 | Wine grape | cytosol | 16.73 | 34.88 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100243367 | wikigene:100243367 | MapMan:15.5.51.3 | UniProt:A5B007 | EMBL:AM441941 |
| ProteinID:CAN65104 | ProteinID:CAN65104.1 | InterPro:CBFA_NFYB_domain | ProteinID:CCB48996 | ProteinID:CCB48996.1 | EMBL:FN595503 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045893 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | EntrezGene:LOC100243367 |
| wikigene:LOC100243367 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | SUPFAM:SSF47113 | TIGR:TC63047 |
| UniParc:UPI000151FD60 | ArrayExpress:VIT_19s0085g00520 | EnsemblPlantsGene:VIT_19s0085g00520 | EnsemblPlants:VIT_19s0085g00520.t01 | RefSeq:XP_002262881 | RefSeq:XP_002262881.2 |
| RefSeq:XP_010645116.1 | RefSeq:XP_010645117.1 | RefSeq:XP_010645118.1 | RefSeq:XP_010645119.1 | RefSeq:XP_010645120.1 | RefSeq:XP_010645121.1 |
| RefSeq:XP_010645122.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:22905452..22906585
Molecular Weight (calculated)
29925.6 Da
IEP (calculated)
5.870
GRAVY (calculated)
-0.528
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPEQTQPQ QQQQHQVVGV VAGAGQMAYG TSPYQTAPMV ASGSPAVAVP SPTQPPGTFP APPHQLAFQQ AQQFHHQQQH QQQQQLQMFW SNQMQEIEQT
101: TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV DIIPRDELKE EGLGVTKASI
201: PVVGSPADAI PYYYVPPPPV GPTGMIMGKA VVDQSSIYAA QQPRPPVPFM PWPQAQSQPQ QPQQQQTDT
101: TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV DIIPRDELKE EGLGVTKASI
201: PVVGSPADAI PYYYVPPPPV GPTGMIMGKA VVDQSSIYAA QQPRPPVPFM PWPQAQSQPQ QPQQQQTDT
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.