Factsheet for TraesCS6B01G185700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147300.1	Wheat	nucleus	87.97	100.0
TraesCS6A01G157900.1	Wheat	nucleus	87.63	99.61
HORVU6Hr1G032200.1	Barley	nucleus	85.91	96.15
Os02t0170500-01	Rice	nucleus	76.63	86.1
KXG24590	Sorghum	nucleus	73.88	84.98
Zm00001d024230_P001	Maize	nucleus, plastid	70.79	82.07
TraesCS7B01G377500.1	Wheat	nucleus	62.2	70.7
Bra003334.1-P	Field mustard	nucleus	42.61	67.39
CDX67737	Canola	nucleus	41.92	64.89
AT1G56170.2	Thale cress	nucleus	43.3	63.32
TraesCS7B01G135000.1	Wheat	nucleus	41.92	61.31
TraesCS5B01G255900.1	Wheat	nucleus	41.92	60.1
VIT_19s0085g00520.t01	Wine grape	cytosol	52.58	56.88
GSMUA_Achr11P...	Banana	cytosol	49.48	56.69
KRH13746	Soybean	nucleus	51.89	56.34
KRH43702	Soybean	nucleus	52.23	56.09
TraesCS7B01G376500.1	Wheat	nucleus	41.58	53.07
TraesCS7B01G377200.1	Wheat	nucleus	44.33	52.02
GSMUA_Achr5P26790_001	Banana	cytosol	38.83	50.45
TraesCS7B01G377000.1	Wheat	nucleus	40.21	50.21
TraesCS4B01G223000.1	Wheat	nucleus	41.24	49.59
GSMUA_Achr11P...	Banana	cytosol	46.39	43.97
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.11	41.86
TraesCS1B01G365500.1	Wheat	mitochondrion	18.56	38.3
TraesCS1B01G366800.1	Wheat	mitochondrion	17.87	37.68
TraesCS7B01G248300.1	Wheat	cytosol	17.53	12.38

Protein Annotations

EnsemblPlants:TraesCS6B01G185700.1	EnsemblPlantsGene:TraesCS6B01G185700	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252
PANTHER:PTHR10252:SF74	PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.5.51.3	:

Description

No Description!

Coordinates

chr6B:+:211213702..211214958

Molecular Weight (calculated)

32312.3 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.469

Length

291 amino acids

Sequence
(BLAST)

001: MCSDNLSLFG ILRSTFSDEI LSDRKIFGFA RTRSHMEPSS QPEPVVGVAT AGSQAYPPPA AYPAPAMPAA IPPGSQPAVP FPANPAQLSA QHQLVYQQAQ
101: QFHQQLQQQQ QQQLREFWAT QMEEIEQATD FKNHTLPLAR IKKIMKADED VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR
201: TDIYDFLVDI IPRDDMKEEG LGLPRVGLPP AALGAPADAY PPYYYVPAQQ VPGVGMMYGG QQGHPVAYAW QQPQGQQAEE APEEQQQSPS N

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.