Factsheet for TraesCS6D01G147300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G157900.1	Wheat	nucleus	99.61	99.61
HORVU6Hr1G032200.1	Barley	nucleus	97.66	96.15
TraesCS6B01G185700.1	Wheat	cytosol	100.0	87.97
Os02t0170500-01	Rice	nucleus	87.11	86.1
KXG24590	Sorghum	nucleus	83.98	84.98
Zm00001d024230_P001	Maize	nucleus, plastid	80.47	82.07
TraesCS7D01G463100.1	Wheat	nucleus	73.05	72.76
Bra003334.1-P	Field mustard	nucleus	48.44	67.39
CDX67737	Canola	nucleus	47.66	64.89
AT1G56170.2	Thale cress	nucleus	49.22	63.32
TraesCS7D01G237100.1	Wheat	nucleus	47.27	60.8
TraesCS5D01G265000.1	Wheat	nucleus	47.27	59.61
VIT_19s0085g00520.t01	Wine grape	cytosol	59.77	56.88
GSMUA_Achr11P...	Banana	cytosol	56.25	56.69
KRH13746	Soybean	nucleus	58.98	56.34
KRH43702	Soybean	nucleus	59.38	56.09
TraesCS7D01G462200.1	Wheat	nucleus	55.08	53.82
TraesCS3D01G102500.1	Wheat	nucleus	48.05	52.79
TraesCS7D01G462100.1	Wheat	nucleus	39.06	50.76
GSMUA_Achr5P26790_001	Banana	cytosol	44.14	50.45
TraesCS4D01G223400.1	Wheat	nucleus	46.88	49.59
GSMUA_Achr11P...	Banana	cytosol	52.34	43.65
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.19	41.86
TraesCS1D01G355600.1	Wheat	mitochondrion	20.31	38.52
TraesCS1D01G354400.1	Wheat	mitochondrion	20.7	37.59
TraesCS7D01G344400.1	Wheat	cytosol	19.92	12.41

Protein Annotations

EnsemblPlants:TraesCS6D01G147300.1	EnsemblPlantsGene:TraesCS6D01G147300	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252
PANTHER:PTHR10252:SF74	PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.5.51.3	:

Description

No Description!

Coordinates

chr6D:+:119296448..119297218

Molecular Weight (calculated)

28308.5 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.519

Length

256 amino acids

Sequence
(BLAST)

001: MEPSSQPEPV VGVATAGSQA YPPPAAYPAP AMPAAIPPGS QPAVPFPANP AQLSAQHQLV YQQAQQFHQQ LQQQQQQQLR EFWATQMEEI EQATDFKNHT
101: LPLARIKKIM KADEDVRMIS AEAPVVFAKA CEVFILELTL RSWMHTEENK RRTLQKNDIA AAITRTDIYD FLVDIIPRDD MKEEGLGLPR VGLPPAALGA
201: PADAYPPYYY VPAQQVPGVG MMYGGQQGHP VAYAWQQPQG QQAEEAPEEQ QQSPSN

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.