Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G263500.1 | |
| TraesCS7B01G161500.1 | |
| TraesCS7D01G264300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G223000.1 | Wheat | nucleus | 99.17 | 99.17 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 98.35 | 98.76 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 97.93 | 98.34 |
| Os03t0251350-00 | Rice | nucleus | 90.5 | 89.02 |
| KXG39763 | Sorghum | nucleus | 87.6 | 85.83 |
| Zm00001d028432_P001 | Maize | nucleus | 86.78 | 85.71 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 51.65 | 65.79 |
| GSMUA_Achr10P... | Banana | nucleus | 51.65 | 64.43 |
| CDY05857 | Canola | nucleus | 54.96 | 60.18 |
| Bra018046.1-P | Field mustard | nucleus | 54.55 | 59.73 |
| CDY08084 | Canola | nucleus | 54.55 | 59.73 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 56.2 | 59.13 |
| Solyc06g072040.1.1 | Tomato | nucleus | 56.61 | 59.05 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.79 | 58.7 |
| AT3G48590.1 | Thale cress | nucleus | 56.2 | 58.12 |
| KRH63772 | Soybean | nucleus | 53.72 | 57.78 |
| KRH54177 | Soybean | nucleus | 54.55 | 57.64 |
| AT5G63470.1 | Thale cress | plastid | 57.85 | 56.0 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 56.61 | 53.94 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 43.8 | 53.27 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 43.39 | 51.72 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 56.2 | 50.0 |
| CDX84419 | Canola | plastid | 55.79 | 47.7 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 49.59 | 46.88 |
| CDY66668 | Canola | plastid | 52.48 | 46.52 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 36.78 | 45.18 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 47.93 | 45.14 |
| CDY48146 | Canola | plastid | 49.17 | 45.08 |
| TraesCS1D01G355600.1 | Wheat | mitochondrion | 22.31 | 40.0 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 38.43 | 39.91 |
| TraesCS1D01G354400.1 | Wheat | mitochondrion | 22.31 | 38.3 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 41.32 | 38.17 |
| TraesCS7D01G344400.1 | Wheat | cytosol | 21.07 | 12.41 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G223400.1 | EnsemblPlantsGene:TraesCS4D01G223400 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF67 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr4D:+:380295336..380296064
Molecular Weight (calculated)
25657.2 Da
IEP (calculated)
5.275
GRAVY (calculated)
-0.392
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHQLPYTT QPPATGAAGG APVPGVPGPP PVPHHHLLQQ QQAQLQAFWA YQRQEAERAS ASDFKNHQLP LARIKKIMKA DEDVRMISAE APVLFAKACE
101: LFILELTIRS WLHAEENKRR TLQRNDVAAA IARTDVFDFL VDIVPREEAK EEPGSAALGF AAGGVGAAGG GPAAGLPYYY PPMGQPAAPM MPAWHVPAWE
201: PAWQQGGADV DQGAGSFGEE GQGYTGGHGG SAGFPPGPPS SE
101: LFILELTIRS WLHAEENKRR TLQRNDVAAA IARTDVFDFL VDIVPREEAK EEPGSAALGF AAGGVGAAGG GPAAGLPYYY PPMGQPAAPM MPAWHVPAWE
201: PAWQQGGADV DQGAGSFGEE GQGYTGGHGG SAGFPPGPPS SE
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.