Factsheet for AT3G48590.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G63470.1	Thale cress	plastid	87.18	81.6
Solyc06g072040.1.1	Tomato	nucleus	77.35	78.02
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.79	76.09
KRH63772	Soybean	nucleus	72.65	75.56
KRH54177	Soybean	nucleus	73.5	75.11
VIT_17s0000g01130.t01	Wine grape	nucleus	76.92	70.87
GSMUA_Achr6P16620_001	Banana	cytosol	57.27	70.53
GSMUA_Achr10P...	Banana	nucleus	56.84	68.56
HORVU4Hr1G062890.2	Barley	nucleus	58.12	56.43
TraesCS4D01G223400.1	Wheat	nucleus	58.12	56.2
TraesCS4B01G223000.1	Wheat	nucleus	58.12	56.2
TraesCS4A01G081000.1	Wheat	nucleus	57.69	56.02
Os03t0251350-00	Rice	nucleus	58.55	55.69
Zm00001d028432_P001	Maize	nucleus	57.27	54.69
AT1G56170.2	Thale cress	nucleus	46.15	54.27
KXG39763	Sorghum	nucleus	57.27	54.25
AT1G54830.3	Thale cress	nucleus	49.57	53.46
AT1G08970.4	Thale cress	nucleus	48.72	49.35
AT5G50480.1	Thale cress	nucleus	38.89	45.05
AT5G27910.1	Thale cress	nucleus	35.04	43.85
AT5G50490.1	Thale cress	cytosol	32.05	40.32
AT5G50470.1	Thale cress	nucleus	26.5	29.25
AT5G38140.1	Thale cress	nucleus	22.22	26.67

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:824019	UniProt:A0A178V5Y7	ProteinID:AEE78434.1	ArrayExpress:AT3G48590
EnsemblPlantsGene:AT3G48590	RefSeq:AT3G48590	TAIR:AT3G48590	RefSeq:AT3G48590-TAIR-G	EnsemblPlants:AT3G48590.1	TAIR:AT3G48590.1
EMBL:AY086120	EMBL:AY092997	Unigene:At.23009	EMBL:BT001206	ProteinID:CAB62348.1	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009987	GO:GO:0016602	GO:GO:0045893	GO:GO:0046982	GO:GO:2000306
Symbol:HAP5A	InterPro:Histone-fold	InterPro:IPR009072	RefSeq:NP_190428.1	ProteinID:OAP01620.1	PFAM:PF00808
PO:PO:0000293	PO:PO:0007131	PO:PO:0009005	PO:PO:0009025	PO:PO:0009046	PANTHER:PTHR10252
PANTHER:PTHR10252:SF71	UniProt:Q9SMP0	SUPFAM:SSF47113	UniParc:UPI00000AC227	EMBL:Y13726	SEG:seg

Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]

Coordinates

chr3:-:18008593..18010018

Molecular Weight (calculated)

25330.0 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.409

Length

234 amino acids

Sequence
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.