Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06341 | Canola | nucleus | 94.37 | 95.61 |
| Bra031651.1-P | Field mustard | nucleus | 94.37 | 95.61 |
| AT1G54830.3 | Thale cress | nucleus | 82.25 | 87.56 |
| CDY22654 | Canola | cytosol | 84.42 | 76.77 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 70.56 | 61.98 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 67.97 | 59.92 |
| PGSC0003DMT400008660 | Potato | nucleus | 65.37 | 59.92 |
| PGSC0003DMT400023211 | Potato | nucleus | 65.8 | 59.38 |
| Solyc01g079870.2.1 | Tomato | nucleus | 66.23 | 59.3 |
| AT1G56170.2 | Thale cress | nucleus | 48.92 | 56.78 |
| Os09t0480700-01 | Rice | nucleus | 40.69 | 55.95 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 43.72 | 50.75 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 43.72 | 50.75 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 29.87 | 50.74 |
| Zm00001d020874_P001 | Maize | extracellular | 43.72 | 50.5 |
| EER96945 | Sorghum | nucleus | 44.16 | 50.49 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 43.29 | 50.25 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 44.16 | 50.25 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 44.16 | 50.25 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 43.72 | 49.75 |
| Zm00001d052838_P001 | Maize | nucleus | 42.86 | 49.01 |
| EES15444 | Sorghum | nucleus | 42.42 | 48.76 |
| AT3G48590.1 | Thale cress | nucleus | 49.35 | 48.72 |
| Zm00001d031310_P001 | Maize | nucleus | 41.99 | 48.5 |
| AT5G63470.1 | Thale cress | plastid | 51.95 | 48.0 |
| Os08t0496500-01 | Rice | nucleus | 42.42 | 47.8 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 29.0 | 45.89 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 30.3 | 44.03 |
| HORVU7Hr1G048760.3 | Barley | plastid | 43.72 | 38.85 |
| AT5G50480.1 | Thale cress | nucleus | 33.77 | 38.61 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 32.47 | 38.46 |
| AT5G27910.1 | Thale cress | nucleus | 29.44 | 36.36 |
| AT5G50490.1 | Thale cress | cytosol | 27.27 | 33.87 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 35.06 | 29.03 |
| AT5G50470.1 | Thale cress | nucleus | 25.54 | 27.83 |
| AT5G38140.1 | Thale cress | nucleus | 21.64 | 25.64 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 48.48 | 16.42 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:837417 | UniProt:A0A178WIM6 | ProteinID:AAB70410.1 | ProteinID:AEE28374.1 |
| ProteinID:AEE28375.1 | ProteinID:AEE28376.1 | ProteinID:AEE28377.1 | EMBL:AF193440 | EMBL:AK316882 | ArrayExpress:AT1G08970 |
| EnsemblPlantsGene:AT1G08970 | RefSeq:AT1G08970 | TAIR:AT1G08970 | RefSeq:AT1G08970-TAIR-G | EnsemblPlants:AT1G08970.4 | TAIR:AT1G08970.4 |
| EMBL:AY085860 | EMBL:AY126997 | EMBL:AY143827 | Unigene:At.22258 | UniProt:B9DFS3 | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009738 |
| GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010029 | GO:GO:0043565 | GO:GO:0046982 |
| GO:GO:2000306 | Symbol:HAP5C | InterPro:Histone-fold | InterPro:IPR009072 | RefSeq:NP_172371.1 | RefSeq:NP_849619.1 |
| RefSeq:NP_973796.1 | RefSeq:NP_973797.1 | ProteinID:OAP18210.1 | PFAM:PF00808 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF75 |
| UniProt:Q8L4B2 | SUPFAM:SSF47113 | UniParc:UPI00000AC3D6 | SEG:seg | : | : |
Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
Coordinates
chr1:+:2882543..2884337
Molecular Weight (calculated)
25641.2 Da
IEP (calculated)
4.882
GRAVY (calculated)
-0.626
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.