Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003334.1-P | Field mustard | nucleus | 71.86 | 77.72 |
| CDX67737 | Canola | nucleus | 70.35 | 74.47 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 75.88 | 56.13 |
| KRH43702 | Soybean | nucleus | 75.38 | 55.35 |
| KRH13746 | Soybean | nucleus | 74.37 | 55.22 |
| KXG24590 | Sorghum | nucleus | 64.82 | 50.99 |
| AT1G54830.3 | Thale cress | nucleus | 55.28 | 50.69 |
| Zm00001d046967_P001 | Maize | nucleus | 62.31 | 50.0 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 62.81 | 50.0 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 63.82 | 49.61 |
| EER88787 | Sorghum | nucleus | 63.32 | 49.41 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 63.32 | 49.22 |
| Os02t0170500-01 | Rice | nucleus | 63.82 | 49.03 |
| AT1G08970.4 | Thale cress | nucleus | 56.78 | 48.92 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 61.31 | 48.61 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 63.32 | 48.46 |
| Zm00001d036648_P001 | Maize | extracellular | 58.79 | 47.76 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 61.31 | 47.47 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 60.8 | 47.27 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 60.3 | 46.69 |
| AT3G48590.1 | Thale cress | nucleus | 54.27 | 46.15 |
| GSMUA_Achr11P... | Banana | cytosol | 58.79 | 46.06 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 57.29 | 43.85 |
| AT5G63470.1 | Thale cress | plastid | 54.77 | 43.6 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 63.32 | 43.3 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 41.71 | 42.13 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 45.23 | 38.46 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 44.72 | 38.2 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 43.72 | 38.16 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 43.72 | 37.34 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 48.24 | 36.64 |
| KXG24666 | Sorghum | nucleus | 41.21 | 36.61 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 43.72 | 35.08 |
| AT5G50480.1 | Thale cress | nucleus | 35.18 | 34.65 |
| AT5G27910.1 | Thale cress | nucleus | 31.16 | 33.16 |
| Os08t0206500-00 | Rice | nucleus | 44.22 | 31.21 |
| AT5G50490.1 | Thale cress | cytosol | 29.15 | 31.18 |
| AT5G50470.1 | Thale cress | nucleus | 32.16 | 30.19 |
| AT5G38140.1 | Thale cress | nucleus | 25.63 | 26.15 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:842070 | UniProt:A0A178WJL4 | ProteinID:AAF02832.1 | ProteinID:AAG50900.1 |
| ProteinID:AEE33353.1 | ProteinID:AEE33354.1 | ArrayExpress:AT1G56170 | EnsemblPlantsGene:AT1G56170 | RefSeq:AT1G56170 | TAIR:AT1G56170 |
| RefSeq:AT1G56170-TAIR-G | EnsemblPlants:AT1G56170.2 | TAIR:AT1G56170.2 | EMBL:AY072411 | EMBL:AY086605 | EMBL:AY114704 |
| InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016602 | GO:GO:0045893 | GO:GO:0046982 | Symbol:HAP5B | InterPro:Histone-fold |
| InterPro:IPR009072 | RefSeq:NP_001077726.1 | RefSeq:NP_176013.1 | ProteinID:OAP18527.1 | PFAM:PF00808 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | UniProt:Q8LCG7 | SUPFAM:SSF47113 | UniParc:UPI00000A5746 | EMBL:Y13725 |
| SEG:seg | : | : | : | : | : |
Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
Coordinates
chr1:+:21024663..21025892
Molecular Weight (calculated)
23125.4 Da
IEP (calculated)
6.025
GRAVY (calculated)
-0.721
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.