Factsheet for AT5G63470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05857	Canola	nucleus	78.0	88.24
Bra018046.1-P	Field mustard	nucleus	77.2	87.33
CDY08084	Canola	nucleus	77.2	87.33
AT3G48590.1	Thale cress	nucleus	81.6	87.18
Bra038636.1-P	Field mustard	nucleus, plastid	88.0	80.88
CDX84419	Canola	plastid	87.2	77.03
CDY66668	Canola	plastid	84.0	76.92
GSMUA_Achr6P16620_001	Banana	cytosol	55.6	73.16
GSMUA_Achr10P...	Banana	nucleus	54.4	70.1
HORVU4Hr1G062890.2	Barley	nucleus	56.0	58.09
TraesCS4D01G223400.1	Wheat	nucleus	56.0	57.85
TraesCS4B01G223000.1	Wheat	nucleus	56.0	57.85
TraesCS4A01G081000.1	Wheat	nucleus	55.6	57.68
Os03t0251350-00	Rice	nucleus	54.8	55.69
AT1G56170.2	Thale cress	nucleus	43.6	54.77
Zm00001d028432_P001	Maize	nucleus	53.6	54.69
KXG39763	Sorghum	nucleus	54.0	54.66
AT1G54830.3	Thale cress	nucleus	47.2	54.38
AT1G08970.4	Thale cress	nucleus	48.0	51.95
AT5G50480.1	Thale cress	nucleus	36.4	45.05
AT5G27910.1	Thale cress	nucleus	32.8	43.85
AT5G50490.1	Thale cress	cytosol	29.6	39.78
AT5G50470.1	Thale cress	nucleus	26.0	30.66
AT5G38140.1	Thale cress	nucleus	22.0	28.21

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:824019	EntrezGene:836466	UniProt:A0A178UJL4	ProteinID:AED97755.1
ProteinID:AED97756.1	ProteinID:AEE78434.1	EMBL:AK317038	ArrayExpress:AT5G63470	EnsemblPlantsGene:AT5G63470	RefSeq:AT5G63470
TAIR:AT5G63470	RefSeq:AT5G63470-TAIR-G	EnsemblPlants:AT5G63470.1	TAIR:AT5G63470.1	EMBL:AY072402	EMBL:AY086120
EMBL:AY092997	UniProt:B9DG64	ProteinID:BAB08812.1	EMBL:BT000218	EMBL:BT001206	ProteinID:CAB62348.1
InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009719	GO:GO:0009738	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987
GO:GO:0010029	GO:GO:0010468	GO:GO:0016602	GO:GO:0019538	GO:GO:0045893	GO:GO:0046982
GO:GO:0048586	GO:GO:0051247	GO:GO:2000306	GO:GO:2000905	InterPro:Histone-fold	InterPro:IPR009072
Symbol:NF-YC4	RefSeq:NP_001032130.1	RefSeq:NP_190428.1	RefSeq:NP_201152.1	ProteinID:OAO93929.1	ProteinID:OAP01620.1
PFAM:PF00808	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0025195	PO:PO:0025281
PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	UniProt:Q9FMV5	SUPFAM:SSF47113	UniParc:UPI00000AC583	EMBL:Y13726
SEG:seg	:	:	:	:	:

Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]

Coordinates

chr5:-:25415600..25417199

Molecular Weight (calculated)

27033.8 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.461

Length

250 amino acids

Sequence
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.