Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 21.54 | 33.33 |
| VIT_14s0006g02320.t01 | Wine grape | cytosol | 17.95 | 27.13 |
| AT5G50470.1 | Thale cress | nucleus | 28.21 | 25.94 |
| AT1G56170.2 | Thale cress | nucleus | 26.15 | 25.63 |
| AT5G50490.1 | Thale cress | cytosol | 22.56 | 23.66 |
| AT5G50480.1 | Thale cress | nucleus | 24.1 | 23.27 |
| AT5G27910.1 | Thale cress | nucleus | 21.54 | 22.46 |
| AT3G48590.1 | Thale cress | nucleus | 26.67 | 22.22 |
| AT1G54830.3 | Thale cress | nucleus | 24.62 | 22.12 |
| AT5G63470.1 | Thale cress | plastid | 28.21 | 22.0 |
| AT1G08970.4 | Thale cress | nucleus | 25.64 | 21.64 |
| Solyc02g091030.2.1 | Tomato | nucleus | 27.18 | 7.83 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:833794 | ProteinID:AED94272.1 | ArrayExpress:AT5G38140 | EnsemblPlantsGene:AT5G38140 |
| RefSeq:AT5G38140 | TAIR:AT5G38140 | RefSeq:AT5G38140-TAIR-G | EnsemblPlants:AT5G38140.1 | TAIR:AT5G38140.1 | ProteinID:BAB11281.1 |
| EMBL:BT021919 | EMBL:BT025775 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YC12 |
| RefSeq:NP_198630.2 | PFAM:PF00808 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | UniProt:Q1ECF9 | UniProt:Q58CM8 |
| SUPFAM:SSF47113 | UniParc:UPI000034F299 | : | : | : | : |
Description
NFYC10Nuclear transcription factor Y subunit C-10 [Source:UniProtKB/Swiss-Prot;Acc:Q58CM8]
Coordinates
chr5:-:15220208..15222524
Molecular Weight (calculated)
22432.0 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.488
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRPKSSHVR MEPVAPRSHN TMPMLDQFRS NHPETSKIEG VSSLDTALKV FWNNQREQLG NFAGQTHLPL SRVRKILKSD PEVKKISCDV PALFSKACEY
101: FILEVTLRAW MHTQSCTRET IRRCDIFQAV KNSGTYDFLI DRVPFGPHCV THQGVQPPAE MILPDMNVPI DMDQIEEENM MEERSVGFDL NCDLQ
101: FILEVTLRAW MHTQSCTRET IRRCDIFQAV KNSGTYDFLI DRVPFGPHCV THQGVQPPAE MILPDMNVPI DMDQIEEENM MEERSVGFDL NCDLQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.