Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27910.1 | Thale cress | nucleus | 69.35 | 68.98 |
| AT5G50480.1 | Thale cress | nucleus | 49.46 | 45.54 |
| AT3G48590.1 | Thale cress | nucleus | 40.32 | 32.05 |
| AT5G63470.1 | Thale cress | plastid | 39.78 | 29.6 |
| AT1G56170.2 | Thale cress | nucleus | 31.18 | 29.15 |
| AT1G54830.3 | Thale cress | nucleus | 33.33 | 28.57 |
| AT5G50470.1 | Thale cress | nucleus | 32.26 | 28.3 |
| AT1G08970.4 | Thale cress | nucleus | 33.87 | 27.27 |
| PGSC0003DMT400039254 | Potato | nucleus | 36.02 | 26.48 |
| AT5G38140.1 | Thale cress | nucleus | 23.66 | 22.56 |
| Solyc03g111460.1.1 | Tomato | cytosol | 34.41 | 22.22 |
| Solyc03g111450.1.1 | Tomato | nucleus | 36.02 | 21.07 |
| Solyc03g111470.1.1 | Tomato | nucleus | 29.57 | 20.15 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:835117 | ProteinID:AED95951.1 | ArrayExpress:AT5G50490 | EnsemblPlantsGene:AT5G50490 |
| RefSeq:AT5G50490 | TAIR:AT5G50490 | RefSeq:AT5G50490-TAIR-G | EnsemblPlants:AT5G50490.1 | TAIR:AT5G50490.1 | ProteinID:BAB09134.1 |
| ProteinID:BAH30624.1 | EMBL:BX833977 | UniProt:C0SVT3 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| Symbol:NF-YC5 | RefSeq:NP_199860.1 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | UniProt:Q9FGP6 |
| SUPFAM:SSF47113 | UniParc:UPI00000A2CB4 | SEG:seg | : | : | : |
Description
NFYC5Nuclear transcription factor Y subunit C-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP6]
Coordinates
chr5:-:20560434..20561228
Molecular Weight (calculated)
20400.9 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.517
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNNNNHQQ PPKDNEQLKS FWSKGMEGDL NVKNHEFPIS RIKRIMKFDP DVSMIAAEAP NLLSKACEMF VMDLTMRSWL HAQESNRLTI RKSDVDAVVS
101: QTVIFDFLRD DVPKDEGEPV VAAADPVDDV ADHVAVPDLN NEELPPGTVI GTPVCYGLGI HAPHPQMPGA WTEEDATGAN GGNGGN
101: QTVIFDFLRD DVPKDEGEPV VAAADPVDDV ADHVAVPDLN NEELPPGTVI GTPVCYGLGI HAPHPQMPGA WTEEDATGAN GGNGGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.