Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93525 | Canola | nucleus | 85.71 | 84.55 |
| Bra018589.1-P | Field mustard | nucleus | 85.25 | 84.09 |
| AT1G08970.4 | Thale cress | nucleus | 87.56 | 82.25 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 90.32 | 59.94 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 70.51 | 58.4 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 70.05 | 57.79 |
| PGSC0003DMT400008660 | Potato | nucleus | 66.82 | 57.54 |
| PGSC0003DMT400023211 | Potato | nucleus | 67.74 | 57.42 |
| Solyc01g079870.2.1 | Tomato | nucleus | 68.2 | 57.36 |
| AT1G56170.2 | Thale cress | nucleus | 50.69 | 55.28 |
| Os09t0480700-01 | Rice | nucleus | 42.4 | 54.76 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 32.26 | 51.47 |
| AT3G48590.1 | Thale cress | nucleus | 53.46 | 49.57 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 45.16 | 49.25 |
| EER96945 | Sorghum | nucleus | 45.62 | 49.01 |
| Zm00001d020874_P001 | Maize | extracellular | 45.16 | 49.0 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 44.7 | 48.74 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 44.7 | 48.74 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 45.16 | 48.28 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 45.16 | 48.28 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 44.7 | 47.78 |
| EES15444 | Sorghum | nucleus | 44.24 | 47.76 |
| Zm00001d052838_P001 | Maize | nucleus | 44.24 | 47.52 |
| Zm00001d031310_P001 | Maize | nucleus | 43.78 | 47.5 |
| AT5G63470.1 | Thale cress | plastid | 54.38 | 47.2 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 31.34 | 46.58 |
| Os08t0496500-01 | Rice | nucleus | 43.32 | 45.85 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 32.26 | 44.03 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 34.56 | 38.46 |
| HORVU7Hr1G048760.3 | Barley | plastid | 44.7 | 37.31 |
| AT5G50480.1 | Thale cress | nucleus | 34.56 | 37.13 |
| AT5G27910.1 | Thale cress | nucleus | 30.88 | 35.83 |
| AT5G50490.1 | Thale cress | cytosol | 28.57 | 33.33 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 37.79 | 29.39 |
| AT5G50470.1 | Thale cress | nucleus | 27.19 | 27.83 |
| AT5G38140.1 | Thale cress | nucleus | 22.12 | 24.62 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 52.07 | 16.57 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | PDB:5G49 | EntrezGene:841922 | UniProt:A0A178WGU5 | ProteinID:AAC64892.1 |
| ProteinID:AAG51114.1 | ProteinID:AEE33151.1 | ProteinID:AEE33152.1 | ProteinID:AEE33153.1 | ArrayExpress:AT1G54830 | EnsemblPlantsGene:AT1G54830 |
| RefSeq:AT1G54830 | TAIR:AT1G54830 | RefSeq:AT1G54830-TAIR-G | EnsemblPlants:AT1G54830.3 | TAIR:AT1G54830.3 | EMBL:AY062775 |
| EMBL:AY081654 | EMBL:AY087517 | Unigene:At.10845 | InterPro:CBFA_NFYB_domain | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009740 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010029 | GO:GO:0046982 | GO:GO:0048574 | GO:GO:2000306 | InterPro:Histone-fold |
| InterPro:IPR009072 | Symbol:NF-YC3 | RefSeq:NP_175880.1 | RefSeq:NP_849808.1 | RefSeq:NP_974030.1 | ProteinID:OAP17334.1 |
| PFAM:PF00808 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10252 |
| PANTHER:PTHR10252:SF75 | UniProt:Q9ZVL3 | SUPFAM:SSF47113 | UniParc:UPI00000A651F | SEG:seg | : |
Description
NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
Coordinates
chr1:+:20451204..20452671
Molecular Weight (calculated)
24313.6 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.710
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.