Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G256500.1 | Wheat | nucleus | 99.51 | 99.51 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 99.01 | 99.01 |
| EER96945 | Sorghum | nucleus | 91.13 | 91.58 |
| Zm00001d020874_P001 | Maize | extracellular | 89.66 | 91.0 |
| Os09t0480700-01 | Rice | nucleus | 70.44 | 85.12 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 81.28 | 82.91 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 38.42 | 57.35 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 36.45 | 50.68 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 38.42 | 49.06 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 59.61 | 47.27 |
| CDX93525 | Canola | nucleus | 50.25 | 46.36 |
| Bra018589.1-P | Field mustard | nucleus | 49.75 | 45.91 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 53.2 | 45.57 |
| Bra030749.1-P | Field mustard | nucleus | 48.77 | 45.41 |
| CDY06341 | Canola | nucleus | 50.74 | 45.18 |
| Bra031651.1-P | Field mustard | nucleus | 50.74 | 45.18 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 56.65 | 44.75 |
| AT1G54830.3 | Thale cress | nucleus | 47.78 | 44.7 |
| PGSC0003DMT400023211 | Potato | nucleus | 56.16 | 44.53 |
| Solyc01g079870.2.1 | Tomato | nucleus | 56.16 | 44.19 |
| AT1G08970.4 | Thale cress | nucleus | 49.75 | 43.72 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 51.72 | 43.39 |
| PGSC0003DMT400008660 | Potato | nucleus | 53.2 | 42.86 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 54.19 | 41.98 |
| KRG96853 | Soybean | nucleus | 53.2 | 41.86 |
| CDY31119 | Canola | nucleus | 38.92 | 41.36 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 53.2 | 41.06 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 56.16 | 40.86 |
| CDY22654 | Canola | cytosol | 50.74 | 40.55 |
| KRH33966 | Soybean | nucleus | 52.22 | 40.15 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 38.92 | 40.1 |
| KRG92828 | Soybean | nucleus | 51.72 | 39.92 |
| KRH43409 | Soybean | nucleus | 39.9 | 39.51 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 37.93 | 39.49 |
| TraesCS1D01G355600.1 | Wheat | mitochondrion | 26.11 | 39.26 |
| TraesCS1D01G354400.1 | Wheat | mitochondrion | 26.6 | 38.3 |
| KRH20896 | Soybean | nucleus | 35.96 | 38.02 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 41.38 | 36.05 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 43.84 | 33.97 |
| CDY32142 | Canola | mitochondrion, nucleus | 48.77 | 33.45 |
| KRH20891 | Soybean | nucleus | 39.41 | 32.92 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 50.25 | 31.19 |
| KRH20893 | Soybean | nucleus | 38.92 | 29.59 |
| TraesCS7D01G344400.1 | Wheat | cytosol | 27.09 | 13.38 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G265000.1 | EnsemblPlantsGene:TraesCS5D01G265000 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF76 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr5D:+:369427831..369428442
Molecular Weight (calculated)
21758.8 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.272
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTKSSTPP PPPVLGAPVG YPPGAYPPPP GAPAAAYPPQ LYAPPGAAAA QQAAAQQQQQ LQVFWAEQYR EIEATTDFKN HNLPLARIKK IMKADEDVRM
101: IAAEAPVVFA RACEMFILEL THRGWAHAEE NKRRTLQKSD IAAAIARTEV FDFLVDIVPR DDAKDAEAAA AAAMATAAAG IPRPAAGVPT TDPSMAYYYV
201: PQQ
101: IAAEAPVVFA RACEMFILEL THRGWAHAEE NKRRTLQKSD IAAAIARTEV FDFLVDIVPR DDAKDAEAAA AAAMATAAAG IPRPAAGVPT TDPSMAYYYV
201: PQQ
001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
Arabidopsis Description
NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.