Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400023211 | Potato | nucleus | 78.63 | 80.47 |
| Solyc01g079870.2.1 | Tomato | nucleus | 78.63 | 79.84 |
| PGSC0003DMT400008660 | Potato | nucleus | 74.05 | 76.98 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 77.1 | 76.81 |
| Bra030749.1-P | Field mustard | nucleus | 59.16 | 71.1 |
| CDX93525 | Canola | nucleus | 59.54 | 70.91 |
| AT1G54830.3 | Thale cress | nucleus | 58.4 | 70.51 |
| Bra018589.1-P | Field mustard | nucleus | 59.16 | 70.45 |
| Bra031651.1-P | Field mustard | nucleus | 59.92 | 68.86 |
| CDY06341 | Canola | nucleus | 59.92 | 68.86 |
| CDY31119 | Canola | nucleus | 50.0 | 68.59 |
| AT1G08970.4 | Thale cress | nucleus | 59.92 | 67.97 |
| Os09t0480700-01 | Rice | nucleus | 39.31 | 61.31 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 62.6 | 60.97 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 31.3 | 60.29 |
| CDY22654 | Canola | cytosol | 57.25 | 59.06 |
| Zm00001d020874_P001 | Maize | extracellular | 43.51 | 57.0 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 31.3 | 56.16 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 33.97 | 55.97 |
| EER96945 | Sorghum | nucleus | 43.13 | 55.94 |
| Os08t0496500-01 | Rice | nucleus | 43.13 | 55.12 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 42.37 | 54.68 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 41.22 | 54.27 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 41.22 | 54.27 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 41.22 | 54.27 |
| EES15444 | Sorghum | nucleus | 41.6 | 54.23 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 41.98 | 54.19 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 41.98 | 54.19 |
| Zm00001d031310_P001 | Maize | nucleus | 40.84 | 53.5 |
| CDY32142 | Canola | mitochondrion, nucleus | 58.4 | 51.69 |
| Zm00001d052838_P001 | Maize | nucleus | 38.93 | 50.49 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 61.45 | 49.24 |
| VIT_02s0025g03770.t01 | Wine grape | mitochondrion | 21.37 | 48.28 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 45.8 | 47.24 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 33.59 | 45.13 |
| HORVU7Hr1G048760.3 | Barley | plastid | 41.6 | 41.92 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 34.73 | 32.62 |
| VIT_14s0006g02320.t01 | Wine grape | cytosol | 14.89 | 30.23 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 53.05 | 20.38 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100266507 | wikigene:100266507 | MapMan:15.5.51.3 | InterPro:CBFA_NFYB_domain | ProteinID:CCB50392 |
| ProteinID:CCB50392.1 | UniProt:F6HDM1 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | EntrezGene:LOC100266507 | wikigene:LOC100266507 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF75 |
| SUPFAM:SSF47113 | TIGR:TC60539 | UniParc:UPI00019831A5 | ArrayExpress:VIT_05s0020g02790 | EnsemblPlantsGene:VIT_05s0020g02790 | EnsemblPlants:VIT_05s0020g02790.t01 |
| unigene:Vvi.2416 | RefSeq:XP_002280741 | RefSeq:XP_002280741.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:4491422..4495338
Molecular Weight (calculated)
29158.8 Da
IEP (calculated)
6.149
GRAVY (calculated)
-0.585
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPGHGQPP AMGMVGSAAQ MPYGIPPFQP NQMVGTSGPG TVGSIQSPTQ PAGISSPAQL AQHQLAYQHI HQQQQQQLQQ QLQNFWQNQY QEIEQTTDFK
101: NHSLPLARIK KIMKADEDVR MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP REDLKDEVLA SIPRGGPLPV
201: GGPAEGLPYF YMQPQHGPQV GAPGMVMGKT VMDQGLYGQQ PRPYVAQQMW PQQQQQQPPA DS
101: NHSLPLARIK KIMKADEDVR MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP REDLKDEVLA SIPRGGPLPV
201: GGPAEGLPYF YMQPQHGPQV GAPGMVMGKT VMDQGLYGQQ PRPYVAQQMW PQQQQQQPPA DS
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.