Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 23.26 | 23.81 |
| VIT_02s0025g03770.t01 | Wine grape | mitochondrion | 20.93 | 23.28 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 35.66 | 18.11 |
| AT5G38140.1 | Thale cress | nucleus | 27.13 | 17.95 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 34.88 | 16.73 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 30.23 | 14.89 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 29.46 | 14.45 |
| Solyc02g091030.2.1 | Tomato | nucleus | 34.11 | 6.5 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100853057 | wikigene:100853057 | MapMan:35.1 | ProteinID:CBI33608 | ProteinID:CBI33608.3 |
| UniProt:D7TSY6 | EMBL:FN596245 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:Histone_H2A/H2B/H3 | InterPro:IPR009072 | EntrezGene:LOC100853057 | wikigene:LOC100853057 | PFAM:PF00125 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | SUPFAM:SSF47113 | UniParc:UPI0001BE3B8F | ArrayExpress:VIT_14s0006g02320 | EnsemblPlantsGene:VIT_14s0006g02320 |
| EnsemblPlants:VIT_14s0006g02320.t01 | unigene:Vvi.4468 | RefSeq:XP_003633710 | RefSeq:XP_003633710.1 | : | : |
Description
No Description!
Coordinates
chr14:-:19804139..19805093
Molecular Weight (calculated)
14307.2 Da
IEP (calculated)
6.871
GRAVY (calculated)
-0.181
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MISADSQILF AKASELFILE LTLRAWFHAE ANKRRTLQPC DIGRAIRCYP TLHFLTNIAP DVHKEEHSEN ISGGAGFVVA NEGVHFPAAN HELIMWNHEI
101: PCSVQLPPIT SSEMVNKNAP KRGKCDGGM
101: PCSVQLPPIT SSEMVNKNAP KRGKCDGGM
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.