Factsheet for VIT_17s0000g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00360.t01
VIT_14s0068g01380.t01
VIT_14s0083g00640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48590.1	VIT_01s0146g00360.t01	AT1G28050.1	17138697
AT3G48590.1	VIT_14s0068g01380.t01	AT1G28050.1	17138697
AT3G48590.1	VIT_14s0083g00640.t01	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.44	80.0
CDY05857	Canola	nucleus	68.9	79.19
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	71.65	79.13
KRH54177	Soybean	nucleus	70.87	78.6
Bra018046.1-P	Field mustard	nucleus	68.11	78.28
CDY08084	Canola	nucleus	68.11	78.28
GSMUA_Achr6P16620_001	Banana	cytosol	57.87	77.37
KRH63772	Soybean	nucleus	68.5	77.33
AT3G48590.1	Thale cress	nucleus	70.87	76.92
GSMUA_Achr10P...	Banana	nucleus	56.3	73.71
Bra038636.1-P	Field mustard	nucleus, plastid	70.47	65.81
CDX84419	Canola	plastid	72.05	64.66
CDY66668	Canola	plastid	68.5	63.74
HORVU4Hr1G062890.2	Barley	nucleus	53.94	56.85
TraesCS4B01G223000.1	Wheat	nucleus	53.94	56.61
TraesCS4D01G223400.1	Wheat	nucleus	53.94	56.61
TraesCS4A01G081000.1	Wheat	nucleus	53.54	56.43
Os03t0251350-00	Rice	nucleus	53.15	54.88
Zm00001d028432_P001	Maize	nucleus	52.36	54.29
KXG39763	Sorghum	nucleus	52.36	53.85
VIT_02s0025g03770.t01	Wine grape	mitochondrion	21.65	47.41
VIT_19s0085g00520.t01	Wine grape	cytosol	50.0	47.21
VIT_05s0020g02790.t01	Wine grape	nucleus	47.24	45.8
VIT_14s0128g00250.t01	Wine grape	nucleus	46.46	44.87
VIT_14s0006g02320.t01	Wine grape	cytosol	18.11	35.66

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100259532	wikigene:100259532	MapMan:15.5.51.3	EMBL:AM425377	ProteinID:CAN73357
ProteinID:CAN73357.1	InterPro:CBFA_NFYB_domain	ProteinID:CCB43337	ProteinID:CCB43337.1	UniProt:F6GSW8	EMBL:FN594950
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:0046982	GO:GO:0048579	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100259532
wikigene:LOC100259532	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	SUPFAM:SSF47113	UniParc:UPI0002109CD2
ArrayExpress:VIT_17s0000g01130	EnsemblPlantsGene:VIT_17s0000g01130	EnsemblPlants:VIT_17s0000g01130.t01	RefSeq:XP_002284041	RefSeq:XP_002284041.1	RefSeq:XP_003634220
RefSeq:XP_003634220.1	RefSeq:XP_003634221	RefSeq:XP_003634221.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:803751..807253

Molecular Weight (calculated)

28653.1 Da

IEP (calculated)

5.625

GRAVY (calculated)

-0.459

Length

254 amino acids

Sequence
(BLAST)

001: MENNQQAQSS PYPPQQPFHH LLQQQQQQLQ MFWSYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK
101: RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEGGLGMV GSTASGVPYY YPPMGQPAPG VMMGRPAVPG VDPGVYVQPP SQAWQSVWQT AEDGSYGSGG
201: SSGQGNLDGQ GYLRLSILKQ PNPNQTQSNT PLYCLYCYCD VVFISLLYQN CKHL

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.