Factsheet for VIT_01s0146g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0054g00530.t01
VIT_17s0000g01130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	VIT_09s0054g00530.t01	AT3G21150.1	21798944
AT1G28050.1	VIT_17s0000g01130.t01	AT3G48590.1	17138697
AT2G33500.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15696	Canola	nucleus	34.12	55.36
Bra030070.1-P	Field mustard	nucleus	35.82	54.55
CDY11755	Canola	nucleus	45.63	54.45
CDY30385	Canola	nucleus	43.5	52.71
CDY68819	Canola	nucleus	43.07	52.2
Bra010908.1-P	Field mustard	nucleus	46.06	51.67
VIT_14s0068g01380.t01	Wine grape	nucleus	49.25	51.45
CDX90119	Canola	nucleus	45.42	50.84
CDY66639	Canola	nucleus	43.5	50.62
AT2G33500.1	Thale cress	nucleus	43.28	50.5
AT1G28050.1	Thale cress	nucleus	46.27	50.12
Bra041077.1-P	Field mustard	nucleus	42.43	48.77
CDY48428	Canola	nucleus	26.01	45.19
GSMUA_Achr10P...	Banana	nucleus	34.97	35.81
EES14176	Sorghum	nucleus	36.25	34.69
GSMUA_Achr6P06130_001	Banana	nucleus	32.62	34.38
Zm00001d031662_P001	Maize	nucleus	34.54	33.13
VIT_07s0104g01360.t01	Wine grape	nucleus	27.72	32.99
GSMUA_Achr11P...	Banana	nucleus	36.03	32.63
TraesCS7D01G264300.1	Wheat	nucleus	33.9	32.52
TraesCS7B01G161500.1	Wheat	nucleus	33.69	32.38
TraesCS7A01G263500.1	Wheat	nucleus	33.69	32.24
Os09t0509700-01	Rice	nucleus	29.0	31.55
HORVU0Hr1G021050.5	Barley	cytosol	24.31	26.95
VIT_00s0194g00070.t01	Wine grape	nucleus	23.24	26.33
VIT_12s0057g01350.t01	Wine grape	nucleus	22.39	25.3
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	18.12	24.5
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	18.55	24.1
VIT_12s0059g02500.t01	Wine grape	nucleus	21.96	23.73
VIT_14s0083g00640.t01	Wine grape	nucleus	18.76	22.51
VIT_01s0011g04240.t01	Wine grape	nucleus	15.99	21.01
VIT_19s0014g05120.t01	Wine grape	nucleus	16.42	20.53

Protein Annotations

EntrezGene:100242118	wikigene:100242118	MapMan:15.5.1.2	ProteinID:CCB60859	ProteinID:CCB60859.1	InterPro:CCT_domain
UniProt:F6I1P2	EMBL:FN596513	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:IPR010402	EntrezGene:LOC100242118	wikigene:LOC100242118	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI000210A5AC	ArrayExpress:VIT_01s0146g00360
EnsemblPlantsGene:VIT_01s0146g00360	EnsemblPlants:VIT_01s0146g00360.t01	RefSeq:XP_002263613	RefSeq:XP_002263613.1	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chr1:-:22216431..22220032

Molecular Weight (calculated)

50859.5 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.526

Length

469 amino acids

Sequence
(BLAST)

001: MVSPKPSNGE RVPCDFCSGQ IAVLYCRADS AKLCLFCDQH VHSANALSRK HLRSQICDNC SSEPVSVRCS TDNMVLCQEC DWDAHGSCSV SAAHDRKPVE
101: GFSGCPSAVQ LSSIWGLDIE EKKAPLPPPP SMAVDSWVYK SNTLTFQDLM VPNGNAVAFP DALGGEVSKR QSPSCGKHKQ VIFKQLVELF RRDLLAGNGG
201: GGGIVGDDED DGGGGVCGGG ENLGHVGESI GIENGGVLDV DHQALEQQTP FTSLLMLPNR ATTGGVILWD NNPSDQSTQI WDFHLGHSRG YEECGLLEAE
301: YGVNDAGFVI KSYSELMKET SFTNTKVVGE MYDINYSMTH EDITSFNNNS NNPTASQGAA TSESNNLPIA RPSSGSAFAK PKSFSGSKDI ELTEQSILMR
401: GESGRTAATT KVDLEQLAQN RGNAMLRYKE KKKTRRYDKH IRYESRKARA DTRKRVKGRF VKATEAPDG

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.