Factsheet for VIT_12s0059g02500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26833	Soybean	nucleus	54.38	55.79
KRH22524	Soybean	nucleus	53.92	55.32
AT4G15250.1	Thale cress	nucleus	37.79	49.7
Solyc05g046040.1.1	Tomato	nucleus	47.23	48.93
PGSC0003DMT400003198	Potato	nucleus	46.77	48.1
AT3G21880.2	Thale cress	nucleus	37.33	44.02
CDY64255	Canola	nucleus	36.87	43.13
VIT_00s0194g00070.t01	Wine grape	nucleus	40.32	42.27
CDY55657	Canola	nucleus	37.1	41.71
Bra023858.1-P	Field mustard	nucleus	37.1	41.71
VIT_12s0057g01350.t01	Wine grape	nucleus	39.4	41.2
VIT_19s0014g05120.t01	Wine grape	nucleus	27.65	32.0
VIT_14s0068g01380.t01	Wine grape	nucleus	23.27	22.49
VIT_01s0011g04240.t01	Wine grape	nucleus	18.2	22.13
VIT_01s0146g00360.t01	Wine grape	nucleus	23.73	21.96
VIT_07s0104g01360.t01	Wine grape	nucleus	18.66	20.56
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	16.82	20.22
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	16.13	20.17
VIT_14s0083g00640.t01	Wine grape	nucleus	17.97	19.95

Protein Annotations

MapMan:15.5.1.2	ProteinID:CCB52054	ProteinID:CCB52054.1	InterPro:CCT_domain	UniProt:F6HIK8	EMBL:FN595765
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF27	SMART:SM00336	UniParc:UPI0002107F89	ArrayExpress:VIT_12s0059g02500
EnsemblPlantsGene:VIT_12s0059g02500	EnsemblPlants:VIT_12s0059g02500.t01	InterPro:Znf_B-box	:	:	:

Description

No Description!

Coordinates

chr12:+:7291808..7293953

Molecular Weight (calculated)

47042.5 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.381

Length

434 amino acids

Sequence
(BLAST)

001: MEPICEFCGV VRAVVYCKSD AARLCLHCDN SVHSANALSR RHLRSLLCDK CNLQPGIYRC MDEKLCICQA CDWIGNGCSA PGHRLQSLQF YMGCPSLSDF
101: SRLWSSVLDL PSATGLKAGW GSMNSVAVDE NCVSQCLEPK DNEGSLVLGC NKLNEQKPWV GASSSMPGAY SSMPPDRKFT SSYCKDQTPF LPDESNPSKV
201: ISFIFSLLIN QSQSQGCSNF KDLGLNEGGD LCQGINMDDV AVNFENSDEM IGSSQGHSTC RYDNAGMDSR LMDKNLSASS LRQHNCNAFP SSCAAGSANV
301: IEAMSGSVGC MLVNPSCSRK MGLGFPGGQV HASVSLSLSN VTGESSAADY QDCGLSPAFL AGESPWTSNL DAHCPQARDK AKMRYNEKKK TRTFGKQIRY
401: ASRKARADTR KRVRGRFVKA GEAYDYDPLT STSN

Best Arabidopsis Sequence Match ( AT3G21880.2 )
(BLAST)

001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.