Factsheet for VIT_14s0083g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01110.t01
VIT_02s0025g01130.t01
VIT_07s0005g05400.t01
VIT_07s0205g00030.t01
VIT_09s0054g00530.t01
VIT_12s0059g01420.t01
VIT_14s0083g00640.t01
VIT_14s0171g00270.t01
VIT_17s0000g01130.t01
VIT_19s0014g02660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02380.1	VIT_09s0054g00530.t01	AT3G21150.1	21798944
AT5G15840.1	VIT_12s0059g01420.t01	AT2G32950.1	18296627
AT5G15840.1	VIT_12s0059g01420.t01	AT2G32950.1	18388858
AT5G15840.1	VIT_07s0005g05400.t01	AT3G24650.1	10743655
AT5G15840.1	VIT_17s0000g01130.t01	AT3G48590.1	17138697
AT5G15840.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944
AT5G15850.1	VIT_19s0014g02660.t01	AT1G53090.1	16854975
AT5G15850.1	VIT_19s0014g02660.t01	AT1G53090.1	18812498
AT5G15850.1	VIT_12s0059g01420.t01	AT2G32950.1	18812498
AT5G15850.1	VIT_02s0025g01110.t01	AT4G11110.1	16854975
AT5G15850.1	VIT_02s0025g01130.t01	AT4G11110.1	16854975
AT5G15850.1	VIT_14s0171g00270.t01	AT5G14250.1	18812498
AT5G15850.1	VIT_14s0083g00640.t01	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089540.2.1	Tomato	nucleus	70.59	70.59
PGSC0003DMT400026065	Potato	nucleus	71.36	67.55
PGSC0003DMT400026068	Potato	nucleus	69.82	67.41
KRH45169	Soybean	nucleus	59.85	67.24
KRH18308	Soybean	nucleus	61.64	66.76
KRH01455	Soybean	nucleus	59.85	66.48
KRG93763	Soybean	nucleus	61.38	65.57
AT3G02380.1	Thale cress	nucleus	57.54	64.84
Solyc02g089520.1.1	Tomato	nucleus	67.77	64.79
CDY71818	Canola	nucleus	47.57	62.84
CDY71884	Canola	nucleus	47.31	62.71
Bra021464.1-P	Field mustard	nucleus	51.15	62.31
AT5G15850.1	Thale cress	nucleus	55.5	61.13
CDX69493	Canola	nucleus	50.13	58.16
Bra008668.1-P	Field mustard	nucleus	49.36	57.27
CDY26470	Canola	nucleus	48.59	57.06
Bra023541.1-P	Field mustard	nucleus	45.78	56.83
CDX85529	Canola	nucleus	45.52	56.15
CDX90969	Canola	nucleus	45.01	54.83
GSMUA_Achr3P28130_001	Banana	nucleus	39.13	54.64
AT5G15840.1	Thale cress	nucleus	51.41	53.89
Bra008669.1-P	Field mustard	nucleus	49.87	53.28
CDX69494	Canola	nucleus	49.87	52.99
CDY26469	Canola	nucleus	49.36	52.73
GSMUA_Achr4P18680_001	Banana	nucleus	11.51	51.14
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	37.34	50.17
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	43.48	48.99
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	43.22	46.81
HORVU0Hr1G022380.1	Barley	cytosol	16.88	23.24
VIT_00s0194g00070.t01	Wine grape	nucleus	21.99	20.77
VIT_07s0104g01360.t01	Wine grape	nucleus	20.72	20.56
VIT_12s0057g01350.t01	Wine grape	nucleus	21.48	20.24
VIT_14s0068g01380.t01	Wine grape	nucleus	22.51	19.6
VIT_01s0146g00360.t01	Wine grape	nucleus	22.51	18.76
VIT_12s0059g02500.t01	Wine grape	nucleus	19.95	17.97
VIT_19s0014g05120.t01	Wine grape	nucleus	15.35	16.0
VIT_01s0011g04240.t01	Wine grape	nucleus	12.53	13.73

Protein Annotations

EntrezGene:100248114	wikigene:100248114	MapMan:15.5.1.2	ProteinID:CCB44068	ProteinID:CCB44068.1	InterPro:CCT_domain
UniProt:F6GVT3	EMBL:FN594955	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
InterPro:IPR000315	InterPro:IPR010402	EntrezGene:LOC100248114	wikigene:LOC100248114	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	TIGR:TC54036
UniParc:UPI0001984B4B	ArrayExpress:VIT_14s0083g00640	EnsemblPlantsGene:VIT_14s0083g00640	EnsemblPlants:VIT_14s0083g00640.t01	unigene:Vvi.1967	RefSeq:XP_002282509
RefSeq:XP_002282509.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:22696160..22698346

Molecular Weight (calculated)

42701.8 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.533

Length

391 amino acids

Sequence
(BLAST)

001: MLKDEGCNAD AAAGGGGGWA RVCDTCRSAA CTIYCRADSA YLCAGCDARI HAANRVASQH ERVWVCESCE RAPAAFVCKA DAASLCATCD ADIHSANPLA
101: RRHHRVPVLP IAGCLYGPPA TDPGGTVVRS AAEADNGFLG QEAEETIDEE DEDEAASWLL LNPVKNNNGS SNNQNNGLLF GGEVDEYLDL VEYNSCPENQ
201: FSDQYNQQQP PPHYSVPHKN YGGDRVVPVQ CGEAKGQLHQ QHQQQGFHLG MEYESSKAAY SYNPSISHSV SVSSMDVGVV PEATTMSDIS ISISHPRPPK
301: GTIDLFSGPP IQMPTQLTPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR FAKRTDVEVE VDQMFSTTLM AESGYGIVPS F

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.