Factsheet for VIT_09s0054g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03520.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_14s0083g00640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	VIT_01s0011g03520.t01	AT1G68520.1	21798944
AT3G21150.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G21150.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT3G21150.1	VIT_14s0083g00640.t01	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063280.1.1	Tomato	nucleus	31.15	31.03
GSMUA_Achr9P13880_001	Banana	nucleus	16.92	29.93
CDY50075	Canola	nucleus	25.38	29.6
CDY19582	Canola	cytosol	24.23	28.51
Bra031255.1-P	Field mustard	cytosol	23.85	28.05
AT3G21150.1	Thale cress	cytosol	24.23	28.0
CDY32408	Canola	cytosol	22.69	26.82
Bra001815.1-P	Field mustard	cytosol	23.08	26.09
CDX82214	Canola	cytosol	23.08	26.09
VIT_12s0059g02510.t01	Wine grape	nucleus	12.69	25.98
GSMUA_Achr1P10450_001	Banana	cytosol	22.69	24.69
PGSC0003DMT400068177	Potato	nucleus	23.85	23.66
KRH44613	Soybean	nucleus	21.92	23.65
GSMUA_Achr7P08700_001	Banana	cytosol	21.92	23.27
KRH47291	Soybean	nucleus	21.15	22.63
GSMUA_Achr6P03790_001	Banana	nucleus	17.69	20.54
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	23.08	20.34
VIT_00s0347g00030.t01	Wine grape	nucleus	16.54	20.28
VIT_00s0203g00210.t01	Wine grape	nucleus	16.54	20.0
VIT_19s0014g03960.t01	Wine grape	nucleus	17.31	15.1
VIT_12s0134g00400.t01	Wine grape	nucleus	17.31	15.05

Protein Annotations

EntrezGene:100241102	wikigene:100241102	MapMan:35.1	ProteinID:ADN87331	ProteinID:ADN87331.1	ProteinID:CCB45068
ProteinID:CCB45068.1	UniProt:F6GYN2	EMBL:FN594972	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	EMBL:HQ179976	InterPro:IPR000315	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31717	PANTHER:PTHR31717:SF22	SMART:SM00336	TIGR:TC61581	UniParc:UPI00015CA30E
ArrayExpress:VIT_09s0054g00530	EnsemblPlantsGene:VIT_09s0054g00530	EnsemblPlants:VIT_09s0054g00530.t01	unigene:Vvi.1915	EntrezGene:ZFPL	wikigene:ZFPL
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:21166392..21167745

Molecular Weight (calculated)

28156.6 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.216

Length

260 amino acids

Sequence
(BLAST)

001: MKGRVCELCN EEASLYCGSD SAFLCWSCDA RVHGANFLVA RHVRHTLCSE CNGLAGDTFF GVGFQPHRLI CRSCSSEVES ETSTDHDSKS SSSPCVSTTE
101: SAPRKGGVSR RKAERTGFTS SVSAVSGVDS RFPSKLRARS SVDAKAEDIL VNWCRKLGLN GSCTSVASHA LGVCLVKLTV LPLRVSLVAA ISCAAKLSGD
201: RSAYTPQNLK RLVEISGVPA KLILAAESKL ARVLKMERRR PRHVRDREEG WAECSGEEFR

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.