Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_07s0130g00490.t01 | Wine grape | cytosol | 94.63 | 94.63 |
PGSC0003DMT400063189 | Potato | cytosol | 80.94 | 85.85 |
Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 85.1 | 85.24 |
KRH27971 | Soybean | nucleus | 84.4 | 84.4 |
KRH77487 | Soybean | nucleus | 84.06 | 83.91 |
KRH24006 | Soybean | cytosol | 80.59 | 78.95 |
AT3G48150.1 | Thale cress | cytosol | 78.34 | 78.07 |
Bra033769.1-P | Field mustard | nucleus | 77.82 | 77.68 |
Bra018081.1-P | Field mustard | cytosol | 77.12 | 76.86 |
CDY58070 | Canola | cytosol | 65.34 | 76.16 |
CDY70805 | Canola | nucleus | 39.69 | 76.08 |
CDY36901 | Canola | cytosol | 64.3 | 74.05 |
CDY44976 | Canola | cytosol | 64.3 | 73.47 |
GSMUA_Achr11P... | Banana | cytosol | 72.1 | 68.87 |
CDY58069 | Canola | nucleus | 53.21 | 68.83 |
Os02t0656300-01 | Rice | cytosol | 70.19 | 67.84 |
TraesCS6A01G251400.1 | Wheat | cytosol | 70.36 | 67.78 |
TraesCS6B01G273900.1 | Wheat | cytosol | 70.36 | 67.78 |
TraesCS6D01G233200.1 | Wheat | cytosol | 70.19 | 67.61 |
EES07517 | Sorghum | cytosol | 70.19 | 67.5 |
Zm00001d017475_P002 | Maize | cytosol | 70.02 | 67.45 |
HORVU0Hr1G027080.4 | Barley | plastid | 64.82 | 62.33 |
HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 70.02 | 62.25 |
KRH29310 | Soybean | cytosol | 34.32 | 61.88 |
Os06t0679100-00 | Rice | plastid | 15.94 | 51.69 |
VIT_11s0016g03260.t01 | Wine grape | cytosol | 18.37 | 13.93 |
Protein Annotations
Gene3D:1.25.40.10 | EntrezGene:100247356 | wikigene:100247356 | MapMan:13.3.4.1.1.2.4 | InterPro:APC8 | ProteinID:CCB47147 |
ProteinID:CCB47147.1 | UniProt:F6H4D6 | EMBL:FN595233 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 | InterPro:IPR011990 | InterPro:IPR013026 |
InterPro:IPR019734 | EntrezGene:LOC100247356 | wikigene:LOC100247356 | PFAM:PF04049 | PFAM:PF13181 | PFAM:PF13414 |
PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 |
InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI00015C935E | ArrayExpress:VIT_07s0031g02330 | EnsemblPlantsGene:VIT_07s0031g02330 |
EnsemblPlants:VIT_07s0031g02330.t01 | unigene:Vvi.21466 | RefSeq:XP_002274876 | RefSeq:XP_002274876.1 | RefSeq:XP_019076429.1 | SEG:seg |
Description
No Description!
Coordinates
chr7:+:18443502..18452666
Molecular Weight (calculated)
67234.0 Da
IEP (calculated)
6.586
GRAVY (calculated)
-0.484
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKESCRNE LRTAICQLSD RCLYSAAKWA AEQLVGIEQD PAKFTPSHTR FQLGSSSIRR RFRTNEIAST PTAGVSSVST PMLEEDEAID GDFYLLAKSY
101: FDCREYRRAA HVLRDQTRKK AVFLRCYALY LAGEKRKEEE MIELEGPLGK SDAVNHELVY LERELSMLRK NGTVDPFGLY LYGLVLNKKG SENLARTVLV
201: ESVNSYPWNW NAWTELQSLC TTIDILNSLN LNYHWMKDFF LANAYQELRM HNESLGKYEY LQGTFSFSNY IQAQIAKAQY SLREFEQVEV IFEELLRNDP
301: YRVEDMDMYS NVLYAKECFS TLSYLAHRVF LTDKYRPESC FIIGNYYSLK GQHEKSVVYF RRALKLNKNY LSAWTLMGHE YVEMKNTPAA VDAYRRAVDI
401: NPCDYRAWYG LGQAYEMMGM PYYALHYFRK SVFLQPNDSR LWIAMGQCYE TDQLQMLEDA IKCYKRAANC NDTEAIALHQ IAKLSKDLKR SEEAAFYYKK
501: DLERMEAEER EGPNLVEALL FLATYYKSQK RFEEAEIYCT RLLDYTGPEK ETAKSLLRGM RKAQSGFSSI DIEHLPP
101: FDCREYRRAA HVLRDQTRKK AVFLRCYALY LAGEKRKEEE MIELEGPLGK SDAVNHELVY LERELSMLRK NGTVDPFGLY LYGLVLNKKG SENLARTVLV
201: ESVNSYPWNW NAWTELQSLC TTIDILNSLN LNYHWMKDFF LANAYQELRM HNESLGKYEY LQGTFSFSNY IQAQIAKAQY SLREFEQVEV IFEELLRNDP
301: YRVEDMDMYS NVLYAKECFS TLSYLAHRVF LTDKYRPESC FIIGNYYSLK GQHEKSVVYF RRALKLNKNY LSAWTLMGHE YVEMKNTPAA VDAYRRAVDI
401: NPCDYRAWYG LGQAYEMMGM PYYALHYFRK SVFLQPNDSR LWIAMGQCYE TDQLQMLEDA IKCYKRAANC NDTEAIALHQ IAKLSKDLKR SEEAAFYYKK
501: DLERMEAEER EGPNLVEALL FLATYYKSQK RFEEAEIYCT RLLDYTGPEK ETAKSLLRGM RKAQSGFSSI DIEHLPP
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.