Factsheet for VIT_19s0014g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0006g02280.t01
VIT_17s0000g04540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	VIT_14s0006g02280.t01	AT1G66750.1	20706207
AT1G78770.1	VIT_17s0000g04540.t01	AT1G74030.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014320.1.1	Tomato	cytosol	86.84	86.21
KRH55075	Soybean	cytosol	84.46	84.77
KRH26168	Soybean	cytosol	83.73	83.73
AT1G78770.1	Thale cress	cytosol	81.72	82.32
Bra035062.1-P	Field mustard	cytosol	81.72	82.17
CDX87437	Canola	cytosol	81.72	82.17
CDX88475	Canola	cytosol	81.54	81.99
CDY10563	Canola	cytosol	61.43	79.81
GSMUA_Achr8P30740_001	Banana	cytosol	76.6	77.45
Os03t0236966-00	Rice	cytosol	73.86	69.78
EER95202	Sorghum	nucleus	73.67	69.6
TraesCS4B01G230900.1	Wheat	plastid	73.67	69.36
TraesCS4A01G075000.1	Wheat	plastid	73.49	68.95
TraesCS4D01G232400.1	Wheat	plastid	73.31	68.78
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	72.39	67.23
Zm00001d028358_P003	Maize	mitochondrion, nucleus	69.84	64.97
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	73.31	63.15

Protein Annotations

EntrezGene:100267422	wikigene:100267422	MapMan:13.3.4.1.1.2.2	EMBL:AM471933	ProteinID:CAN63864	ProteinID:CAN63864.1
ProteinID:CCB46241	ProteinID:CCB46241.1	UniProt:F6H2M3	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0032875	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EntrezGene:LOC100267422	wikigene:LOC100267422	PFAM:PF12895	PFAM:PF13181	PFAM:PF13424
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF81901	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000210921F	ArrayExpress:VIT_19s0014g01170
EnsemblPlantsGene:VIT_19s0014g01170	EnsemblPlants:VIT_19s0014g01170.t01	RefSeq:XP_002283201	RefSeq:XP_002283201.1	RefSeq:XP_002283201.2	SEG:seg

Description

No Description!

Coordinates

chr19:+:1302636..1319898

Molecular Weight (calculated)

63024.5 Da

IEP (calculated)

6.203

GRAVY (calculated)

-0.273

Length

547 amino acids

Sequence
(BLAST)

001: MKMREEEIEK LRGVVRDCLS KHLYSSAIFF ADKVAAFTSD PADIYMQAQA LFLGRHYRRA FHLLNASQIV LRDLRFRYLA AKCLEEQKEW DQCLLMLGDA
101: KVDEHGNVND TKDCNVMYLD KEGEDREINI SSAICFLRGK AYEALENRAQ ARLWYKAAIK ADPLCYEALE CLIENHMLTS EEEASLLSSL QFAPEDGWLS
201: SFYSCLIKKY DKETVVEAKF TELEKQSCNI NPSDPSFICT LKNNTDLLAC KAEYYHQCGE YQKCFELTAI LLEKDPFHMK CTLVHLAAAM ELGHSNELYL
301: MACNLVKDYP QKALSWFAVG CYYYCIKKYD QSRRYFSKAA NLDGTFPPAL IGCGNAYAAQ EEGDQAMLAY RTAARLFPGC HLPTLYIGME YMRTHSFKLA
401: EQFFMQAKTI CPSDPLVYNE LGVVAYDMKE YNKAVWWFQK TLSHIPSSLS EMWEPTIVNL AHAYRKLKMY HEAISFYEKA LTLSTRSLST YAGLAYTYHL
501: QDNFPAAITY YHKALWLKPD DQFCTEMLTL ALVDEARRGL DPRNESR

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.