CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94212
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	KRH39114	AT1G66750.1	20706207
AT1G78770.1	KRH41782	AT1G66750.1	20706207
AT1G78770.1	KRH48600	AT1G66750.1	20706207
AT1G78770.1	KRH60482	AT1G66750.1	20706207
AT1G78770.1	KRG94212	AT1G74030.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26168	Soybean	cytosol	96.51	96.16
VIT_19s0014g01170.t01	Wine grape	cytosol	84.77	84.46
Solyc12g014320.1.1	Tomato	cytosol	84.04	83.12
AT1G78770.1	Thale cress	cytosol	80.73	81.03
Bra035062.1-P	Field mustard	cytosol	80.37	80.51
CDX87437	Canola	cytosol	80.37	80.51
CDX88475	Canola	cytosol	80.18	80.33
CDY10563	Canola	cytosol	60.55	78.38
GSMUA_Achr8P30740_001	Banana	cytosol	74.86	75.42
EER95202	Sorghum	nucleus	71.56	67.36
Os03t0236966-00	Rice	cytosol	71.38	67.18
TraesCS4B01G230900.1	Wheat	plastid	70.64	66.27
TraesCS4A01G075000.1	Wheat	plastid	70.64	66.04
TraesCS4D01G232400.1	Wheat	plastid	70.64	66.04
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	69.91	64.69
Zm00001d028358_P003	Maize	mitochondrion, nucleus	66.61	61.73
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	70.64	60.63

Protein Annotations

EntrezGene:100818974	MapMan:13.3.4.1.1.2.2	EMBL:ACUP02003875	EnsemblPlantsGene:GLYMA_06G228700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	UniProt:I1KDK4	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH55075
ProteinID:KRH55075	ProteinID:KRH55075.1	PFAM:PF12895	PFAM:PF13176	PFAM:PF13181	PFAM:PF13424
PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF81901	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002339BA9

Description

hypothetical protein

Coordinates

chr6:+:34735476..34746508

Molecular Weight (calculated)

62872.8 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.266

Length

545 amino acids

Sequence
(BLAST)

001: MREEEMEKLR GVVRDCVSKH LYSSAIFFAD KVAAFTADPA DIYMQAQALF LGRHYRRAFH LLNASKIVLT DLRFRYLAAK CLEELKEWDQ CLSMLGEAKV
101: DDDGNVYDMK DSNVMYLDKD CEDREINISS AICFLRGKAY EALENRAQAR MWYKAAIKAD PLCYEALECL IENHMLTCEE EANLISSLQF GSEDGWLSSF
201: YSCLIKKYDK ENIVVAKFRD LENESCKSDQ SDSSFLRTLK SNTDLLACKA EYYHQCGEYQ KCFELTNDLL EKDLFHLKTT LVHLAAAVEL GHSNELYLMS
301: CNLVKDYPQM ALSWFAVGCY YYCIKKYDQS RRYFSKATSL DGTFPPAWIG YGNAYAAQEE GDQAMSAYRT AARLFPGCHL ATLYIGMECM RTHSYKLAEQ
401: FFTQAKSICS SDPLVYNELG VVAYHMEEYK KAVWWFEKTL ALVPTTLSEI WESTVVNLAH AYRKLKMYRE AISYYEKALA LSTRSVSTYA GLAYTYHLQD
501: DFTTAIAYYH KALWLKPDDQ FCTEMLSWAL IDESRRGVDP SLEFR

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.