Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95202 | Sorghum | nucleus | 89.98 | 91.54 |
| Zm00001d028358_P003 | Maize | mitochondrion, nucleus | 88.29 | 88.44 |
| Os03t0236966-00 | Rice | cytosol | 85.06 | 86.53 |
| TraesCS4B01G230900.1 | Wheat | plastid | 83.87 | 85.03 |
| TraesCS4A01G075000.1 | Wheat | plastid | 84.04 | 84.91 |
| TraesCS4D01G232400.1 | Wheat | plastid | 83.53 | 84.39 |
| HORVU4Hr1G064670.6 | Barley | cytosol, mitochondrion, nucleus, plastid | 83.87 | 77.8 |
| GSMUA_Achr8P30740_001 | Banana | cytosol | 68.93 | 75.05 |
| VIT_19s0014g01170.t01 | Wine grape | cytosol | 67.23 | 72.39 |
| Solyc12g014320.1.1 | Tomato | cytosol | 66.55 | 71.14 |
| Bra035062.1-P | Field mustard | cytosol | 65.7 | 71.14 |
| CDX87437 | Canola | cytosol | 65.7 | 71.14 |
| CDX88475 | Canola | cytosol | 65.53 | 70.96 |
| AT1G78770.1 | Thale cress | cytosol | 65.36 | 70.9 |
| CDY10563 | Canola | cytosol | 50.59 | 70.78 |
| KRH55075 | Soybean | cytosol | 64.69 | 69.91 |
| KRH26168 | Soybean | cytosol | 64.35 | 69.29 |
Protein Annotations
| EntrezGene:103639381 | MapMan:13.3.4.1.1.2.2 | ProteinID:AQL08201.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:K7VK95 | PFAM:PF07720 | PFAM:PF12895 |
| PFAM:PF13176 | PFAM:PF13181 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 |
| PANTHER:PTHR12558:SF9 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-3 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | UniParc:UPI0002210FCB | EnsemblPlantsGene:Zm00001d047979 | EnsemblPlants:Zm00001d047979_P005 | EnsemblPlants:Zm00001d047979_T005 | SEG:seg |
Description
Putative tetratricopeptide repeat domain containing family protein
Coordinates
chr9:-:146948067..146968055
Molecular Weight (calculated)
66781.9 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.255
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSNFGFPR VLPTSSASAE PSPKRRRIGE ATDPPPEMRE EALERLRGVV RDSAGKHLYT SAIFLADKVA AATGDPGDVY MLAQALFLGR QFRRALHLLN
101: NSRLLRDLRF RFLAAKCLEE LKEWHQCLLM LGDAKVDEHG NVLDHDVGSD IYFDKDAEDH EINIKSALCF LRGKAYEALD NRDLARQWYK AAVKADPLCY
201: EAIECLVDNY MLTCEEEVEL LSSLQFGEED GWLSAFYSCL VTKHEKEYLV EAKFKELEQE ACSISSSSSG ETMKNNIDVL VCKAEYYHQS GEYQKCFKLT
301: SSLLERDPFH LKCTLVHLAT AMELGHCNDL YLLACNLVKD YPQKALSWFA VGCYYYCIKK YDQARRYFGK ATGLDGAFPP AWIGTGIAYA AQEEGDQAMA
401: AFRTAARLFP GCHLPTLYMG MQYVRMHNFK LAEQFFTQAK SICPSDPLIH NELGVVAYNM KEYRKAVQLF ELTLDHTSSS LNEMWEPTLV NLGHALRKLK
501: EYQKAVSYYA KALTFPTKSL SAFAGLAYTY HLMDDFEAAI NYYHKALWLK PDDQFCTDML TYALESICQI TARRKPGRGL LTATGGVTC
101: NSRLLRDLRF RFLAAKCLEE LKEWHQCLLM LGDAKVDEHG NVLDHDVGSD IYFDKDAEDH EINIKSALCF LRGKAYEALD NRDLARQWYK AAVKADPLCY
201: EAIECLVDNY MLTCEEEVEL LSSLQFGEED GWLSAFYSCL VTKHEKEYLV EAKFKELEQE ACSISSSSSG ETMKNNIDVL VCKAEYYHQS GEYQKCFKLT
301: SSLLERDPFH LKCTLVHLAT AMELGHCNDL YLLACNLVKD YPQKALSWFA VGCYYYCIKK YDQARRYFGK ATGLDGAFPP AWIGTGIAYA AQEEGDQAMA
401: AFRTAARLFP GCHLPTLYMG MQYVRMHNFK LAEQFFTQAK SICPSDPLIH NELGVVAYNM KEYRKAVQLF ELTLDHTSSS LNEMWEPTLV NLGHALRKLK
501: EYQKAVSYYA KALTFPTKSL SAFAGLAYTY HLMDDFEAAI NYYHKALWLK PDDQFCTDML TYALESICQI TARRKPGRGL LTATGGVTC
001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
Arabidopsis Description
APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.