Factsheet for TraesCS4D01G232400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G245600.1
TraesCS1B01G256600.1
TraesCS1D01G245300.1
TraesCS2A01G035700.1
TraesCS2B01G048700.1
TraesCS2D01G034900.1
TraesCS5A01G188100.1
TraesCS5B01G195500.1
TraesCS5D01G202900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	TraesCS1A01G245600.1	AT1G66750.1	20706207
AT1G78770.1	TraesCS1B01G256600.1	AT1G66750.1	20706207
AT1G78770.1	TraesCS1D01G245300.1	AT1G66750.1	20706207
AT1G78770.1	TraesCS5A01G188100.1	AT1G74030.1	20706207
AT1G78770.1	TraesCS5B01G195500.1	AT1G74030.1	20706207
AT1G78770.1	TraesCS5D01G202900.1	AT1G74030.1	20706207
AT1G78770.1	TraesCS2A01G035700.1	AT4G08900.1	20706207
AT1G78770.1	TraesCS2B01G048700.1	AT4G08900.1	20706207
AT1G78770.1	TraesCS2D01G034900.1	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G075000.1	Wheat	plastid	99.31	99.31
TraesCS4B01G230900.1	Wheat	plastid	95.54	95.87
Os03t0236966-00	Rice	cytosol	87.31	87.91
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	94.68	86.93
EER95202	Sorghum	nucleus	83.02	83.59
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	84.39	83.53
Zm00001d028358_P003	Maize	mitochondrion, nucleus	80.62	79.93
GSMUA_Achr8P30740_001	Banana	cytosol	70.5	75.97
VIT_19s0014g01170.t01	Wine grape	cytosol	68.78	73.31
Bra035062.1-P	Field mustard	cytosol	66.72	71.51
CDX87437	Canola	cytosol	66.72	71.51
Solyc12g014320.1.1	Tomato	cytosol	67.58	71.51
CDX88475	Canola	cytosol	66.38	71.14
AT1G78770.1	Thale cress	cytosol	66.21	71.09
CDY10563	Canola	cytosol	51.29	71.02
KRH55075	Soybean	cytosol	66.04	70.64
KRH26168	Soybean	cytosol	65.52	69.84

Protein Annotations

MapMan:13.3.4.1.1.2.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087
GO:GO:0032875	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF12895	PFAM:PF13176
PFAM:PF13181	PFAM:PF13424	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558
PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
EnsemblPlantsGene:TraesCS4D01G232400	EnsemblPlants:TraesCS4D01G232400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:392735827..392749462

Molecular Weight (calculated)

66322.2 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.318

Length

583 amino acids

Sequence
(BLAST)

001: MLDTKFGFPP SSPAAAPPSR APATGAAPNL KRRRREGEGD AGADADMREE AVERLRGVVR DSVGKHLYTS AIFLADKVAA ATGDPADVYM LAQALFLGRH
101: FRRALHVLNN SRLLRDLRFR FLAAKCLEEL KEWHQCLMML GDAKVDEHGN VLDQDDGSDI YFDKDAEDHE INIKSAICFL RGKAYEALDN RDLARQWYKA
201: AVKVDPLCYE ALECLVDNYM LTCEEESELL ASLKFGKEDG WLSAFYSCLI RKHEKEYVVE AKFKDLERES CSISPSSGQM MKNNIDVLAC KAEYYHQSGE
301: YQKCFELTSV LLERDPFHLK CTLVHLAAAM ELGHSNDLYL LSCNLVKDYP QKAISWFAVG CYYYCIKKYD QARRYFGKAT GLDGTFPPAW FGTGIAYAAQ
401: EEGDQAMAAF RTAARLFPGC HLPTLYMGMQ YVRMHNFKLA EQFFMQAKSI CPSDPLIYNE LGVVAYNMKE YQNAVQWFEL TLTHTSSSPN EMWEPTMVNL
501: GHTLRKLKQY KKAISYYEKA LTFPTKTLSA FSGLAYTYQL MDDFEAAITY YHKALWLKPD DQFCTDMLTL ALETSCQSTA RRK

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.