Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87437 | Canola | cytosol | 95.03 | 94.85 |
| Bra035062.1-P | Field mustard | cytosol | 95.03 | 94.85 |
| CDX88475 | Canola | cytosol | 94.84 | 94.67 |
| CDY10563 | Canola | cytosol | 72.01 | 92.87 |
| VIT_19s0014g01170.t01 | Wine grape | cytosol | 82.32 | 81.72 |
| KRH55075 | Soybean | cytosol | 81.03 | 80.73 |
| KRH26168 | Soybean | cytosol | 80.11 | 79.52 |
| Solyc12g014320.1.1 | Tomato | cytosol | 80.66 | 79.49 |
| GSMUA_Achr8P30740_001 | Banana | cytosol | 73.48 | 73.75 |
| Os03t0236966-00 | Rice | cytosol | 72.19 | 67.7 |
| EER95202 | Sorghum | nucleus | 71.82 | 67.36 |
| TraesCS4A01G075000.1 | Wheat | plastid | 71.45 | 66.55 |
| TraesCS4B01G230900.1 | Wheat | plastid | 71.09 | 66.44 |
| TraesCS4D01G232400.1 | Wheat | plastid | 71.09 | 66.21 |
| Zm00001d047979_P005 | Maize | cytosol, mitochondrion, nucleus, plastid | 70.9 | 65.36 |
| Zm00001d028358_P003 | Maize | mitochondrion, nucleus | 67.77 | 62.59 |
| HORVU4Hr1G064670.6 | Barley | cytosol, mitochondrion, nucleus, plastid | 71.27 | 60.94 |
Protein Annotations
| MapMan:13.3.4.1.1.2.2 | EntrezGene:844213 | ProteinID:AAC83033.1 | ProteinID:AEE36148.1 | EMBL:AF529177 | EMBL:AK118058 |
| Symbol:APC6 | ArrayExpress:AT1G78770 | EnsemblPlantsGene:AT1G78770 | RefSeq:AT1G78770 | TAIR:AT1G78770 | RefSeq:AT1G78770-TAIR-G |
| EnsemblPlants:AT1G78770.1 | TAIR:AT1G78770.1 | EMBL:AY085381 | Unigene:At.34243 | UniProt:B3DNN5 | EMBL:BT033023 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010087 | GO:GO:0016567 | GO:GO:0019538 |
| GO:GO:0032875 | GO:GO:0051301 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_565188.1 |
| PFAM:PF00515 | PFAM:PF07720 | PFAM:PF12895 | PFAM:PF13181 | PFAM:PF13424 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF9 | SMART:SM00028 |
| SUPFAM:SSF48452 | SUPFAM:SSF81901 | InterPro:TPR-3 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 |
| InterPro:TPR_repeat | UniParc:UPI00001632FC | SEG:seg | : | : | : |
Description
APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
Coordinates
chr1:+:29616919..29621447
Molecular Weight (calculated)
61764.6 Da
IEP (calculated)
6.280
GRAVY (calculated)
-0.247
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.