Factsheet for HORVU4Hr1G064670.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G062980.2
HORVU2Hr1G005320.1
HORVU5Hr1G058950.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	HORVU1Hr1G062980.2	AT1G66750.1	20706207
AT1G78770.1	HORVU5Hr1G058950.3	AT1G74030.1	20706207
AT1G78770.1	HORVU2Hr1G005320.1	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G075000.1	Wheat	plastid	87.4	95.2
TraesCS4D01G232400.1	Wheat	plastid	86.93	94.68
TraesCS4B01G230900.1	Wheat	plastid	85.98	93.98
Os03t0236966-00	Rice	cytosol	80.63	88.43
EER95202	Sorghum	nucleus	77.01	84.46
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	77.8	83.87
Zm00001d028358_P003	Maize	mitochondrion, nucleus	74.65	80.61
GSMUA_Achr8P30740_001	Banana	cytosol	65.04	76.34
VIT_19s0014g01170.t01	Wine grape	cytosol	63.15	73.31
Solyc12g014320.1.1	Tomato	cytosol	62.36	71.87
Bra035062.1-P	Field mustard	cytosol	61.42	71.69
CDX87437	Canola	cytosol	61.42	71.69
CDX88475	Canola	cytosol	61.1	71.32
AT1G78770.1	Thale cress	cytosol	60.94	71.27
CDY10563	Canola	cytosol	47.24	71.26
KRH55075	Soybean	cytosol	60.63	70.64
KRH26168	Soybean	cytosol	60.16	69.84

Protein Annotations

MapMan:13.3.4.1.1.2.2	UniProt:A0A287PD72	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010087	GO:GO:0032875	EnsemblPlantsGene:HORVU4Hr1G064670	EnsemblPlants:HORVU4Hr1G064670.6	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF12895	PFAM:PF13176	PFAM:PF13181	PFAM:PF13424	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000B477ACA	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:+:541504302..541530564

Molecular Weight (calculated)

72395.5 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.323

Length

635 amino acids

Sequence
(BLAST)

001: RASGRSRRSP SFCSFAFISQ KYKYELFNFL FKTNPPFSFK EPHLRTLVRM LDTKFGFPPS SSPAAAPPSR APATAAAPNP KRRRREGEGD ADAEADMREE
101: AVERLRGVVR DSVGKHLYTS AIFLADKVAA ATGDPADVYM LAQALFLGRH FRRALHVLNN SRLLRDLRFR FLAAKCLEEL KEWHQCLMML GDAKVDEHGN
201: VLDQDDGSDI YFDKDAEDHE INIKSAICFL RGKAYEALDN RDLARQWYKA AVKVDPLCYE ALECLVDNYM LTCEEESELL ASLKFGKEDG WLSAFYSCLI
301: RKHEKEYVVE AKFKELERGS SSICISSSSG QMMKNNIDVL ACKAEYYHQS GEYQKCFELT SVLLERDPFH LKSTLVHLAA AMELGHSNDL YLLSCNLVKD
401: YPQKAISWFA VGCYYYCIKK YDQARRYFGK ATGLDGTFPP AWIGTGIAYA AQEEGDQAMA AFRTAARLFP GCHLPALYMG MQYVRMHNFK LAEQFFMQAK
501: SICPSDPLIY NELGVVAYNM KEYQNAVQWF ELTLTHTSSS SNEMWEPTMV NLGHALRKLK QYEKAISYYE KALTFPTKTL SAFSGLAYTY QLMDDFEAAI
601: TYYHKALWLK PDDQFCTDML TLALETSCQS MARRK

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.