Factsheet for Os03t0236966-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0106300-01
Os09t0375000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	Os09t0375000-01	AT1G74030.1	20706207
AT1G78770.1	Os04t0106300-01	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G075000.1	Wheat	plastid	88.43	87.82
TraesCS4B01G230900.1	Wheat	plastid	87.74	87.44
TraesCS4D01G232400.1	Wheat	plastid	87.91	87.31
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	86.53	85.06
EER95202	Sorghum	nucleus	84.97	84.97
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	88.43	80.63
Zm00001d028358_P003	Maize	mitochondrion, nucleus	81.87	80.61
GSMUA_Achr8P30740_001	Banana	cytosol	71.5	76.53
VIT_19s0014g01170.t01	Wine grape	cytosol	69.78	73.86
Bra035062.1-P	Field mustard	cytosol	68.22	72.61
CDX87437	Canola	cytosol	68.22	72.61
CDX88475	Canola	cytosol	67.88	72.24
CDY10563	Canola	cytosol	52.5	72.21
AT1G78770.1	Thale cress	cytosol	67.7	72.19
Solyc12g014320.1.1	Tomato	cytosol	68.57	72.05
KRH55075	Soybean	cytosol	67.18	71.38
KRH26168	Soybean	cytosol	66.49	70.38

Protein Annotations

MapMan:13.3.4.1.1.2.2	UniProt:A0A0P0VV58	ProteinID:BAS83154.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0032875	GO:GO:0055114	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlantsGene:Os03g0236966	EnsemblPlants:Os03t0236966-00	PFAM:PF12895	PFAM:PF13181	PFAM:PF13424	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF81901	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000393ACE9	SEG:seg

Description

Oryza sativa anaphase-promoting complex 6, anaphase-promoting complex 6, anaphase promoting complex/Cyclosome subunit APC6, ANAPHASE PROMOTING COMPLEX 6Similar to TPR Domain containing protein, expressed. (Os03t0236966-00)

Coordinates

chr3:+:7212586..7221029

Molecular Weight (calculated)

66023.9 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.261

Length

579 amino acids

Sequence
(BLAST)

001: WRMWDTKFGF PPAAPPTTAA AAQKNPKRRR EAEAEGEVAA EMREEAVERL RGVVRDSVGK HLYASAIFLA DKVAAATGDP ADVYMLAQAL FLGRHFRRAL
101: HILNSSKLLR DLRFRFLAAK CLEELKEWHQ CLIILGDAKI DEHGNVVDQD DGSDIYFDKD AEDHEINIKA AICFLRGKAY EALDNCDLAR QWYKAAVKAD
201: PLCYEALECL VDNYMLTCEE ESELLSSLKF GKEDGWLSAF YSCLIRKHEK EYIVEAKFKE FERESCSISS LSSGLTLKNN IDVLACKAEY YHQSGEYQKC
301: FELTSALLER DPFHLKCTLV HLAAAMELGH SNDLYILACN LVKDYPQKAL SWFAVGCYYY CIKKYDQARR YFGKATGLDG TFPPAWIGTG IAYAAQEEGD
401: QAMAAFRTAA RLFPGCHLPT LYMGMQYLRM HNFKLAEQFF TQAKSICPSD PLIYNEMGVV AYNMKEYQKA VQWFELTLEH TSSSLNEMWE PTLVNLGHAL
501: RKLKKYQKAI SYYEKALTFQ TKSLSAFAGL AYTYHLMDKF EAAITYYHKA LWLKPDDQFS TDMLTLALES SCQITARTR

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.