CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94212
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	KRH39114	AT1G66750.1	20706207
AT1G78770.1	KRH41782	AT1G66750.1	20706207
AT1G78770.1	KRH48600	AT1G66750.1	20706207
AT1G78770.1	KRH60482	AT1G66750.1	20706207
AT1G78770.1	KRG94212	AT1G74030.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55075	Soybean	cytosol	96.16	96.51
VIT_19s0014g01170.t01	Wine grape	cytosol	83.73	83.73
Solyc12g014320.1.1	Tomato	cytosol	83.18	82.58
AT1G78770.1	Thale cress	cytosol	79.52	80.11
Bra035062.1-P	Field mustard	cytosol	78.98	79.41
CDX87437	Canola	cytosol	78.98	79.41
CDX88475	Canola	cytosol	78.79	79.23
CDY10563	Canola	cytosol	59.41	77.2
GSMUA_Achr8P30740_001	Banana	cytosol	74.59	75.42
EER95202	Sorghum	nucleus	70.75	66.84
Os03t0236966-00	Rice	cytosol	70.38	66.49
TraesCS4B01G230900.1	Wheat	plastid	69.84	65.75
TraesCS4A01G075000.1	Wheat	plastid	69.84	65.52
TraesCS4D01G232400.1	Wheat	plastid	69.84	65.52
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	69.29	64.35
Zm00001d028358_P003	Maize	mitochondrion, nucleus	66.0	61.39
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	69.84	60.16

Protein Annotations

EntrezGene:100817356	MapMan:13.3.4.1.1.2.2	EMBL:ACUP02007567	EnsemblPlantsGene:GLYMA_12G156300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	UniProt:I1LT60	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH26168
ProteinID:KRH26168	ProteinID:KRH26168.1	PFAM:PF12895	PFAM:PF13176	PFAM:PF13181	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233D785	:	:

Description

hypothetical protein

Coordinates

chr12:-:25101780..25123985

Molecular Weight (calculated)

62969.7 Da

IEP (calculated)

5.001

GRAVY (calculated)

-0.259

Length

547 amino acids

Sequence
(BLAST)

001: MREEEMEKLR GVVRDCVSKH LYSSAIFFAD KVAAFTADPA DIYMQAQALF LGRHYRRAFH LLNASKIVLT DLRFRYLAAK CLEELKEWDQ CLSMLGEAKV
101: DDDGNVYDMK DSNVMYLDKD CEDREINISS AICFLRGKAF EALENRAQAR LWYKAAIKAD PLCYEALECL IENHMLTCEE EANLISSLQF GSEDGWLYSF
201: YSCLIKKYDK ENVVEAKFRD LENESCKSDQ SDSSFLRTLK SNTDLLACKA EYYYQCGEYQ KCFELTNDLL EKDLFHLKTT LVHLAAAVEL GHSNELYLMS
301: CNLVKDYPQM ALSWFAVGCY YYSIKKYDQS RRYFSKATSL DGTFLPAWIG YGNAYAAQEE GDQAMSAYRT AARLFPGCHL ATLYIGMECM RTHSYKLAEQ
401: FFTQAKSICP SDPLVYNELG VVAYHMEEYK KAAWWFEKTL ALVPTTLSEM WESTVVNLAH AYRKLTMYQD AISYYEKALA LSTRSVSTYA GLAYTYHLQD
501: DFTTAISYYH KALWLKPDDQ FCTEMLSWAL IDESRRGVDP VLNSGEV

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.