CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98819
EES10350
EES18176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	EES18176	AT1G66750.1	20706207
AT1G78770.1	EER98819	AT1G74030.1	20706207
AT1G78770.1	EES10350	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	91.54	89.98
Zm00001d028358_P003	Maize	mitochondrion, nucleus	87.74	86.39
Os03t0236966-00	Rice	cytosol	84.97	84.97
TraesCS4A01G075000.1	Wheat	plastid	83.94	83.36
TraesCS4D01G232400.1	Wheat	plastid	83.59	83.02
TraesCS4B01G230900.1	Wheat	plastid	83.07	82.79
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	84.46	77.01
GSMUA_Achr8P30740_001	Banana	cytosol	70.12	75.05
VIT_19s0014g01170.t01	Wine grape	cytosol	69.6	73.67
Bra035062.1-P	Field mustard	cytosol	67.88	72.24
CDX87437	Canola	cytosol	67.88	72.24
CDY10563	Canola	cytosol	52.5	72.21
CDX88475	Canola	cytosol	67.7	72.06
Solyc12g014320.1.1	Tomato	cytosol	68.57	72.05
AT1G78770.1	Thale cress	cytosol	67.36	71.82
KRH55075	Soybean	cytosol	67.36	71.56
KRH26168	Soybean	cytosol	66.84	70.75

Protein Annotations

MapMan:13.3.4.1.1.2.2	EntrezGene:8078876	UniProt:C5WRM5	EnsemblPlants:EER95202	ProteinID:EER95202	ProteinID:EER95202.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0032875
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF00515	PFAM:PF07720	PFAM:PF12895
PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9
SMART:SM00028	EnsemblPlantsGene:SORBI_3001G443300	SUPFAM:SSF48452	InterPro:TPR-3	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001A832A9	RefSeq:XP_002468204.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:72070234..72079747

Molecular Weight (calculated)

65945.7 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.322

Length

579 amino acids

Sequence
(BLAST)

001: MWNSNFGFPR IPPTSSTAAD AAAEPSPKRR RIGEAADPPP EMREEALERL RGVVRDCAGK HLYKSAIFLA DKVATVTGDP GDIYMLAQAL FLGRQFRRAL
101: HLLNNSRLLR DLRFRFLAAK CLEELKEWHQ CLLMLGDAKV DEHGNVLDQD DGSDFYFDKD AEDREINIKS ALCFLRGKAY EALDNRDLAR QWYKAAVKAD
201: PLCYEALECL VDNYMLTCEE ESELLSSLQF GEEDGWLSTF YSCLITKHEK EDLVEAKFKK LEQEACSISS SSSGERMKNN IDVLACKAEY HHQSGEYQKC
301: FQLTSSLLER DPFHLKSTLV HLATALELGH SNDLYLLACN LVKDYPQKAL SWFAVGCYYY CIKKYDQARR YFGKATGLDG TFPPAWIGTG IAYAAQEEGD
401: QAMAAFRTAA RLFPGCHLPT LYMGMQYVRM HNFKLAEQFF TQAKSICPSD PLIYNEAGVV AYNMKEYRKA VQLFELTLKH TSSSLNEMWE PTLVNLGHAL
501: RKLKEYQKAV SYYEKALTLP TKSLSVFAGL AYTYHLMDDF EAAINYYHKA LWLKPDDQFC TEMLTDALGS ICQARRRIV

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.