Factsheet for Solyc12g014320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g091160.2.1
Solyc01g091170.2.1
Solyc03g114500.2.1
Solyc08g081280.2.1
Solyc10g045050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	Solyc08g081280.2.1	AT1G66750.1	20706207
AT1G78770.1	Solyc03g114500.2.1	AT1G74030.1	20706207
AT1G78770.1	Solyc10g045050.1.1	AT1G74030.1	20706207
AT1G78770.1	Solyc01g091160.2.1	AT4G08900.1	20706207
AT1G78770.1	Solyc01g091170.2.1	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01170.t01	Wine grape	cytosol	86.21	86.84
KRH55075	Soybean	cytosol	83.12	84.04
KRH26168	Soybean	cytosol	82.58	83.18
Bra035062.1-P	Field mustard	cytosol	79.85	80.88
CDX87437	Canola	cytosol	79.85	80.88
CDX88475	Canola	cytosol	79.67	80.7
AT1G78770.1	Thale cress	cytosol	79.49	80.66
CDY10563	Canola	cytosol	59.71	78.15
GSMUA_Achr8P30740_001	Banana	cytosol	74.41	75.79
EER95202	Sorghum	nucleus	72.05	68.57
Os03t0236966-00	Rice	cytosol	72.05	68.57
TraesCS4B01G230900.1	Wheat	plastid	71.87	68.16
TraesCS4A01G075000.1	Wheat	plastid	71.87	67.92
TraesCS4D01G232400.1	Wheat	plastid	71.51	67.58
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	71.14	66.55
Zm00001d028358_P003	Maize	mitochondrion, nucleus	67.88	63.61
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	71.87	62.36

Protein Annotations

MapMan:13.3.4.1.1.2.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010087	GO:GO:0032875	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4DCW7
PFAM:PF12895	PFAM:PF13176	PFAM:PF13181	PFAM:PF13424	PFAM:PF13432	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc12g014320.1
EnsemblPlants:Solyc12g014320.1.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000276A7CF	:

Description

Anaphase-promoting complex subunit 6 [Source:Projected from Arabidopsis thaliana (AT1G78770) UniProtKB/Swiss-Prot;Acc:B3DNN5]

Coordinates

chr12:-:5135180..5145918

Molecular Weight (calculated)

63553.0 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.281

Length

551 amino acids

Sequence
(BLAST)

001: MREEEIERLR GVVRDCVSKH LYSSAIFFAD KVAAITSDPA DIYMQAQALY LGRHYRRAFH LLNASQIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DEHGNITDTR EFNSMYLDKD GEDREINILS AICFLRGKAY EALENRAQAR LWYKAAIKAD PLCYEALECL IENHMLTCDE ERTLLSCLQF GPEDGWLSSF
201: YSCLIKKYDK ENVVEAKFRE LEQSGPNTKL SDKSVLCTLK SNSDLLACKA EYYHQCGEYQ KCFELTSELL EKDPFHLKCT LVHLAAAMEL GHSNELYLMA
301: CNLVKDYPQK ALSWFAVGCY YYCIKKYDQA RRYFSKATSL DGTFASAWIG YGNAYAAQEE GDQAMSAYRT AARLFPGYHL PTLYIGMEYM RTHSFKLAEQ
401: FFMQAKSICP SDPLVYNELG VVAYHMKEYK KAVRWFEKTL SHIPSSLSEM WESTVINLAH ALRKLKRYNE AIAYYERALA LSTRSLSTYA GLAYTYHLQN
501: NYTSAITYYH KALWFKPDDQ FCTEMLTLAL VDESRHGIDP IVESRSGGLF M

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.