Factsheet for Solyc08g081280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g091650.2.1
Solyc01g107870.2.1
Solyc01g108610.2.1	nucleus, nucleus
Solyc01g109860.2.1
Solyc02g090680.2.1	nucleus, nucleus
Solyc02g091130.2.1
Solyc03g120440.1.1	nucleus, nucleus, nucleus
Solyc04g007550.2.1
Solyc04g078310.2.1	nucleus
Solyc04g081190.2.1
Solyc04g082430.2.1	nucleus, nucleus
Solyc05g006050.2.1	nucleus
Solyc05g008460.2.1
Solyc05g051410.2.1	nucleus, nucleus
Solyc06g061040.2.1
Solyc06g063220.2.1
Solyc06g063290.2.1
Solyc06g065680.2.1	nucleus, nucleus
Solyc07g005950.2.1
Solyc07g054950.1.1	nucleus, nucleus, nucleus
Solyc07g056580.2.1
Solyc07g066660.2.1
Solyc08g067030.2.1
Solyc08g077200.2.1
Solyc09g061280.2.1	nucleus, nucleus
Solyc09g091780.2.1	nucleus, nucleus
Solyc10g005900.2.1
Solyc10g024410.1.1
Solyc10g053900.1.1
Solyc10g078330.1.1	nucleus
Solyc10g080950.1.1	nucleus
Solyc11g005090.1.1	nucleus
Solyc11g010460.1.1	nucleus, nucleus
Solyc11g040280.1.1
Solyc12g011330.2.1
Solyc12g027870.1.1
Solyc12g055760.1.1
Solyc12g088470.1.1	nucleus
Solyc12g088500.1.1	nucleus
Solyc12g088520.1.1	nucleus
Solyc12g088530.1.1	nucleus
Solyc12g094600.1.1	nucleus, nucleus
Solyc12g098310.1.1	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18040.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT1G18040.1	Solyc04g082430.2.1	AT1G20610.1	20407024
AT1G18040.1	Solyc12g094600.1.1	AT1G20610.1	20407024
AT1G18040.1	Solyc11g005090.1.1	AT1G44110.1	20407024
AT1G18040.1	Solyc03g120440.1.1	AT1G80370.1	20407024
AT1G18040.1	Solyc09g091780.2.1	AT2G32710.1	20407024
AT1G18040.1	Solyc12g098310.1.1	AT2G32710.1	20407024
AT1G18040.1	Solyc10g078330.1.1	AT3G11520.1	20407024
AT1G18040.1	Solyc10g080950.1.1	AT3G11520.1	20407024
AT1G18040.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT1G18040.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT1G18040.1	Solyc09g061280.2.1	AT3G24810.1	20407024
AT1G18040.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT1G18040.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT1G18040.1	Solyc04g078310.2.1	AT5G43080.1	20407024
AT1G18040.1	Solyc12g088470.1.1	AT5G43080.1	20407024
AT1G18040.1	Solyc12g088500.1.1	AT5G43080.1	20407024
AT1G18040.1	Solyc12g088520.1.1	AT5G43080.1	20407024
AT1G18040.1	Solyc12g088530.1.1	AT5G43080.1	20407024
AT1G66750.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT1G66750.1	Solyc07g066660.2.1	AT1G16330.1	20407024
AT1G66750.1	Solyc06g061040.2.1	AT1G32380.1	20706207
AT1G66750.1	Solyc08g077200.2.1	AT1G32380.1	20706207
AT1G66750.1	Solyc01g107870.2.1	AT1G49760.1	20706207
AT1G66750.1	Solyc06g063220.2.1	AT1G51650.1	20706207
AT1G66750.1	Solyc12g055760.1.1	AT1G51650.1	20706207
AT1G66750.1	Solyc10g005900.2.1	AT1G55750.1	20706207
AT1G66750.1	Solyc07g056580.2.1	AT1G66340.1	20706207
AT1G66750.1	Solyc12g011330.2.1	AT1G66340.1	20706207
AT1G66750.1	Solyc09g091780.2.1	AT2G32710.1	20407024
AT1G66750.1	Solyc12g098310.1.1	AT2G32710.1	20407024
AT1G66750.1	Solyc10g024410.1.1	AT2G44530.1	20706207
AT1G66750.1	Solyc10g078330.1.1	AT3G11520.1	20407024
AT1G66750.1	Solyc10g080950.1.1	AT3G11520.1	20407024
AT1G66750.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT1G66750.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT1G66750.1	Solyc06g063290.2.1	AT3G21140.1	20706207
AT1G66750.1	Solyc09g061280.2.1	AT3G24810.1	20407024
AT1G66750.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT1G66750.1	Solyc07g005950.2.1	AT4G30825.1	20706207
AT1G66750.1	Solyc01g109860.2.1	AT4G36490.1	20706207
AT1G66750.1	Solyc10g053900.1.1	AT4G36490.1	20706207
AT1G66750.1	Solyc11g040280.1.1	AT4G36490.1	20706207
AT1G66750.1	Solyc04g081190.2.1	AT4G38900.1	20706207
AT1G66750.1	Solyc02g091130.2.1	AT5G08670.1	17426018
AT1G66750.1	Solyc04g007550.2.1	AT5G08670.1	17426018
AT1G66750.1	Solyc05g008460.2.1	AT5G08670.1	17426018
AT1G66750.1	Solyc02g091130.2.1	AT5G08690.1	17426018
AT1G66750.1	Solyc04g007550.2.1	AT5G08690.1	17426018
AT1G66750.1	Solyc05g008460.2.1	AT5G08690.1	17426018
AT1G66750.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT1G66750.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT1G66750.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT1G66750.1	Solyc08g067030.2.1	AT5G25460.1	20706207
AT1G66750.1	Solyc12g027870.1.1	AT5G63610.1	20407024
AT1G73690.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT1G73690.1	Solyc07g066660.2.1	AT1G16330.1	20407024
AT1G73690.1	Solyc04g082430.2.1	AT1G20610.1	20407024
AT1G73690.1	Solyc12g094600.1.1	AT1G20610.1	20407024
AT1G73690.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT1G73690.1	Solyc09g091780.2.1	AT2G32710.1	20407024
AT1G73690.1	Solyc12g098310.1.1	AT2G32710.1	20407024
AT1G73690.1	Solyc01g091650.2.1	AT3G61140.1	20706207
AT1G73690.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT1G73690.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT1G73690.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT1G73690.1	Solyc06g065680.2.1	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032131	Potato	cytosol	98.33	98.33
KRH41782	Soybean	cytosol, nucleus	70.17	80.99
VIT_17s0000g02960.t01	Wine grape	cytosol	81.15	80.57
KRH39114	Soybean	nucleus	78.28	79.81
KRH48600	Soybean	cytosol	76.13	79.55
VIT_14s0006g02280.t01	Wine grape	cytosol	65.87	79.54
KRH60482	Soybean	cytosol	76.37	78.24
AT1G18040.1	Thale cress	cytosol	69.69	74.68
CDY21722	Canola	cytosol	68.74	74.04
CDX81858	Canola	cytosol	68.5	73.78
CDX96739	Canola	cytosol	68.97	73.54
Bra016572.1-P	Field mustard	cytosol	68.74	73.28
AT1G66750.1	Thale cress	cytosol	60.62	72.99
Bra031013.1-P	Field mustard	cytosol	65.63	72.94
CDY36228	Canola	cytosol	60.38	72.91
CDX96131	Canola	cytosol	60.38	72.91
TraesCS1D01G245300.1	Wheat	cytosol	73.27	72.41
TraesCS1B01G256600.1	Wheat	cytosol	73.27	72.41
TraesCS1A01G245600.1	Wheat	cytosol	73.27	72.41
HORVU1Hr1G062980.2	Barley	cytosol	73.27	72.24
CDX83876	Canola	cytosol	68.02	72.15
AT1G73690.1	Thale cress	cytosol	68.26	71.86
CDX73001	Canola	cytosol	67.3	71.03
CDY60132	Canola	cytosol	66.83	70.53
Bra015974.1-P	Field mustard	cytosol	66.83	70.53
EES18176	Sorghum	cytosol	71.36	69.86
Zm00001d010476_P001	Maize	cytosol	71.36	69.86
GSMUA_Achr3P09020_001	Banana	cytosol	75.42	66.95
Zm00001d038109_P002	Maize	cytosol	68.5	66.74
GSMUA_Achr9P17590_001	Banana	cytosol	74.46	62.28
Solyc11g070140.1.1	Tomato	cytosol	31.5	44.9
Solyc12g095860.1.1	Tomato	cytosol, nucleus	31.5	44.9
Solyc10g074720.1.1	Tomato	cytosol, nucleus	30.07	41.58
Solyc08g066330.1.1	Tomato	cytosol	29.12	39.74
Solyc04g082840.2.1	Tomato	cytosol	29.12	38.73
Solyc12g027870.1.1	Tomato	cytosol	29.59	36.9
Solyc08g067450.1.1	Tomato	cytosol	25.3	33.87
Solyc08g005470.2.1	Tomato	cytosol	29.12	27.05
Solyc06g083210.2.1	Tomato	cytosol	27.21	26.09
Solyc08g075890.2.1	Tomato	cytosol	27.45	25.39
Solyc05g014760.2.1	Tomato	nucleus	31.98	16.56

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.4	MapMan:14.6.3.1.3	MapMan:15.3.5.6.2.2	MapMan:18.4.3.1.4	Gene3D:3.30.200.20
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004693
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0045944	GO:GO:0051726	GO:GO:0070985	InterPro:IPR000719	UniProt:K4CPC5
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF242	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc08g081280.2	EnsemblPlants:Solyc08g081280.2.1	UniParc:UPI000276BEE6	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:64341733..64349041

Molecular Weight (calculated)

47794.7 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.489

Length

419 amino acids

Sequence
(BLAST)

001: MSEVEKLLSM NRKAADRYLK REVLGEGTYG VVYKAIDTKS GQVVAIKKIR LGKQKEGVNF TALREIKLLK ELKDPSVIEL IECFPHKGNL HLVFEFMETD
101: LEAVIRDRNI FLSPADIKSY IQMTLKGLAF CHKKWVLHRD MKPNNLLIGP DGQLKLADFG LARIFGSPDR RFTHQVFARW YRAPELLFGA KQYGPGVDVW
201: AAACIFAELL LRRPFLQGNS DIDQLGKIFA AFGTPKPSQW HDMVYLPDYV EYQYVPGQPF KTLFPTATDD CLDLLSKMFT YDPKARISAQ QALEHRYFSS
301: GPPPTEPALL PRPPPKREPG NPKVSDLNPH DGPVVLSPPR KSRRVMPHRE GFEANMHPEK MDDHENEIQQ AAGERSEQVP MSLDFSVFGM KPPTRPTINS
401: ADRTHLKRKL DLEFQPEEE

Best Arabidopsis Sequence Match ( AT1G18040.1 )
(BLAST)

001: MPEQPKKVAD RYLKQEVLGQ GTYGVVFKAT DTKTEQTVAI KKIRLGKQRE GVNITALREI KMLKELKHPH IILLIDAFPH KENLHLVFEF METDLEAVIR
101: DSNIFLSPAD IKSYLLMTFK GLAYCHDKWV LHRDMKPNNL LIGVDGQLKL ADFGLARIFG SPNRKFTHQV FARWYRAPEL LFGAKQYGAA VDVWAVACIF
201: AELLLRRPFL QGNSDIDQLS KIFAAFGTPK ADQWPDLTKL PDYVEYQFVP APSLRSLFPA VSDDALDLLS KMFTYDPKAR ISIKQALEHR YFTSAPAPTD
301: PAKLPKPVPK QDGKSSYGKH EAITVQSPPR KLRRVMPERG RVDSLKSHVD KDQQAPMSLD FTILAERPPN RPTITSADRS HLKRKLDLEF Q

Arabidopsis Description

CDKD-3Cyclin-dependent kinase D-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.