Factsheet for Solyc06g061040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068395	Potato	plastid	93.55	94.25
Solyc10g024410.1.1	Tomato	cytosol, nucleus	58.31	81.03
GSMUA_Achr11P...	Banana	cytosol, plastid	64.27	76.85
CDY68772	Canola	endoplasmic reticulum, golgi	62.28	75.6
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	61.79	75.0
Solyc08g077200.2.1	Tomato	plastid	72.21	73.3
KRH57590	Soybean	nucleus	70.47	72.26
Bra023263.1-P	Field mustard	plastid	69.98	71.39
CDY01279	Canola	plastid	70.22	71.28
CDX93837	Canola	plastid	69.98	71.03
AT1G32380.1	Thale cress	plastid	70.47	71.0
VIT_02s0012g00530.t01	Wine grape	plastid	69.73	70.78
HORVU6Hr1G015080.5	Barley	mitochondrion	65.51	70.59
KRH04308	Soybean	plastid	69.98	69.46
CDY32299	Canola	plastid	69.73	69.21
CDY31684	Canola	plastid	68.49	69.17
Bra005344.1-P	Field mustard	plastid	68.49	69.17
CDX84209	Canola	plastid	68.24	68.92
AT2G35390.2	Thale cress	plastid	68.24	68.24
Zm00001d015115_P001	Maize	plastid	67.0	67.67
Os02t0127700-02	Rice	plastid	66.25	67.42
EES06216	Sorghum	plastid	66.5	67.34
TraesCS6B01G110600.1	Wheat	plastid	66.0	65.84
TraesCS6A01G088200.2	Wheat	nucleus	65.76	65.76
TraesCSU01G018200.1	Wheat	plastid	65.26	65.26
Bra010159.1-P	Field mustard	plastid	26.55	46.93
Solyc07g056330.2.1	Tomato	cytosol, nucleus	17.37	21.88
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	16.87	21.12
Solyc04g039620.2.1	Tomato	plastid	16.13	20.06
Solyc04g039650.2.1	Tomato	plastid	2.73	13.92

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:50.2.7	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009116	GO:GO:0009156	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740
GO:GO:0044249	UniProt:K4C6T4	HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like
InterPro:PRibTrfase_dom	InterPro:PRib_PP_synth_CS	ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF54	InterPro:Pribosyltran_N
InterPro:Rib-P_diPkinase	InterPro:Rib-P_diPkinase_bac	SMART:SM01400	SUPFAM:SSF53271	EnsemblPlantsGene:Solyc06g061040.2	EnsemblPlants:Solyc06g061040.2.1
TIGRFAMs:TIGR01251	UniParc:UPI0002766572	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:39075861..39081781

Molecular Weight (calculated)

44102.0 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.027

Length

403 amino acids

Sequence
(BLAST)

001: MASFTLFSSF SSTKKNTLIS SFSSSSITSS LYRTSFAPKR TRPLNSVINC EINEPANEKP NVPIINDVIL PTFLQDKCSE NAVTSDNTKL NPKLKLFSGT
101: ANPSLSEEIA WNMGHELGKI TIKRFADGEI YVQLQESVRG CDVFLIQPTC PPVNENLMEL LVMIDACRRA SAKNITAVIP YFGYARADRK TQNRQSIAAK
201: LVGNVITEAG ADRVLACDLH SGQSMGYFDI PVDHVHCQPV ITDYLASKKI SSNDLVVVSP DVGAVARARA FAKKLDAPLA IVDKRFQEHN HAEVMNLIGD
301: VKGKVAVMVD DMIDTAGTIC KGAELLHEEG AREIYACCTH GVFSPPAIGM LSSGLFEEVI TTNTIPVMDR HYFPQLTVLS VANLLGETIW RVHGDRSVSS
401: IYQ

Best Arabidopsis Sequence Match ( AT1G32380.1 )
(BLAST)

001: MASLALTSPP SVKIPSYLSS SSSSLFSRSS ISFRTTESRS RICVSGYAKC NLPKALNGNA RVPIINETTI PKFFDSSRLE KSVSRNNTKL KLFSGTANPA
101: LSQEIAWYMG LELGKVSIKR FADGEIYVQL KESVRGCDVF LVQPTCTPTN ENLMELLIMV DACRRASAKK VTAVIPYFGY ARADRKTQGR ESIAAKLVAN
201: LITEAGADRV LACDLHSGQS MGYFDIPVDH VYCQPVILDY LASKSISSED LVVVSPDVGG VARARAFAKK LSDAPLAIVD KRRHGHNVAE VMNLIGDVKG
301: KVAVMVDDII DTAGTIVKGA ALLHEEGARE VYACCTHAVF SPPAIERLSS GLLQEVIVTN TLPVAEKNYF PQLTILSVAN LLGETIWRVH DDSSVSSIFL

Arabidopsis Description

PRS2Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.