Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g051930.2.1 | |
| Solyc07g056330.2.1 | |
| Solyc10g007760.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42910.1 | Solyc07g056330.2.1 | AT2G42910.1 | 21798944 |
| AT2G42910.1 | Solyc10g007760.2.1 | AT2G42910.1 | 21798944 |
| AT2G42910.1 | Solyc06g051930.2.1 | AT3G49160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044713 | Potato | cytosol | 97.5 | 97.5 |
| Solyc10g007760.2.1 | Tomato | extracellular, nucleus, plastid | 89.38 | 88.82 |
| VIT_12s0142g00090.t01 | Wine grape | cytosol | 83.44 | 81.9 |
| AT2G42910.1 | Thale cress | cytosol | 81.88 | 77.74 |
| Bra000280.1-P | Field mustard | cytosol | 81.56 | 77.22 |
| GSMUA_Achr8P25470_001 | Banana | cytosol, golgi, mitochondrion | 76.88 | 77.12 |
| CDX83511 | Canola | cytosol | 82.19 | 76.9 |
| GSMUA_Achr9P27600_001 | Banana | cytosol | 76.56 | 76.8 |
| Os02t0714600-01 | Rice | cytosol, extracellular, nucleus, plasma membrane | 77.5 | 76.31 |
| KRG98919 | Soybean | cytosol | 76.25 | 76.25 |
| CDY60199 | Canola | cytosol | 81.25 | 76.25 |
| KRH46053 | Soybean | cytosol, nucleus | 75.94 | 75.94 |
| Bra004730.1-P | Field mustard | cytosol | 81.25 | 75.8 |
| CDX79840 | Canola | cytosol | 81.25 | 75.8 |
| CDY42811 | Canola | cytosol | 72.5 | 75.08 |
| Zm00001d017833_P001 | Maize | cytosol, extracellular, mitochondrion | 75.94 | 74.77 |
| Zm00001d051634_P001 | Maize | cytosol | 75.0 | 73.85 |
| EES07369 | Sorghum | cytosol | 75.31 | 72.59 |
| Solyc04g039650.2.1 | Tomato | plastid | 15.0 | 60.76 |
| TraesCS6D01G259800.1 | Wheat | golgi, plastid, unclear | 74.69 | 57.73 |
| TraesCS6B01G308200.1 | Wheat | plastid | 74.69 | 57.59 |
| TraesCS6A01G279400.1 | Wheat | plastid | 74.69 | 57.18 |
| Solyc04g039620.2.1 | Tomato | plastid | 56.88 | 56.17 |
| Solyc10g024410.1.1 | Tomato | cytosol, nucleus | 20.62 | 22.76 |
| Solyc08g077200.2.1 | Tomato | plastid | 22.19 | 17.88 |
| Solyc06g061040.2.1 | Tomato | plastid | 21.88 | 17.37 |
Protein Annotations
| KEGG:00030+2.7.6.1 | KEGG:00230+2.7.6.1 | Gene3D:3.40.50.2020 | MapMan:4.1.1.2.1 | GO:GO:0000287 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004749 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009116 | GO:GO:0009165 | GO:GO:0009987 | GO:GO:0016740 | UniProt:K4CGG6 |
| PFAM:PF00156 | PFAM:PF13793 | InterPro:PRTase-like | InterPro:PRibTrfase_dom | PANTHER:PTHR10210 | PANTHER:PTHR10210:SF34 |
| InterPro:Pribosyltran_N | SMART:SM01400 | SUPFAM:SSF53271 | EnsemblPlantsGene:Solyc07g056330.2 | EnsemblPlants:Solyc07g056330.2.1 | TMHMM:TMhelix |
| UniParc:UPI000276B06A | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:64203621..64207268
Molecular Weight (calculated)
35703.9 Da
IEP (calculated)
6.672
GRAVY (calculated)
0.045
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGTSTKKQ VLLYYCVEME DVARKIAADS DCIHLHSINW RSFEDGFPNL FINKAHNIRG QHVAFLASFS SPAVIFEQLS VIFALPRLFV ASFTLVLPFF
101: PTGSFERMEE EGDVATAFTM ARILSNIPVS RGGPTSVVVY DIHALQERFY FGDHVLPLFE TGIPLLKQRL QQLPESEKIV IAFPDDGAWK RFYKQLGNYP
201: AVICTKVRED DKRIVRLKEG DPAGCHVVIV DDLVQSGGTL IECQKVLAAH GAAKVSAYVT HGVFPKRSWE QFLHKNDGSE KAFTYFWITD SCPVTVRAIA
301: NKAPFEVISL AGSIADALQT
101: PTGSFERMEE EGDVATAFTM ARILSNIPVS RGGPTSVVVY DIHALQERFY FGDHVLPLFE TGIPLLKQRL QQLPESEKIV IAFPDDGAWK RFYKQLGNYP
201: AVICTKVRED DKRIVRLKEG DPAGCHVVIV DDLVQSGGTL IECQKVLAAH GAAKVSAYVT HGVFPKRSWE QFLHKNDGSE KAFTYFWITD SCPVTVRAIA
301: NKAPFEVISL AGSIADALQT
001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
Arabidopsis Description
PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.