CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98919
KRH46053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	KRG98919	AT2G42910.1	21798944
AT2G42910.1	KRH46053	AT2G42910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98919	Soybean	cytosol	95.0	95.0
PGSC0003DMT400054829	Potato	cytosol	78.12	79.11
VIT_12s0142g00090.t01	Wine grape	cytosol	80.31	78.83
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	77.81	77.33
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	75.94	76.18
PGSC0003DMT400044713	Potato	cytosol	75.94	75.94
Solyc07g056330.2.1	Tomato	cytosol, nucleus	75.94	75.94
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	76.88	75.69
AT2G42910.1	Thale cress	cytosol	79.38	75.37
GSMUA_Achr9P27600_001	Banana	cytosol	75.0	75.24
Bra000280.1-P	Field mustard	cytosol	79.38	75.15
CDX83511	Canola	cytosol	79.06	73.98
CDY60199	Canola	cytosol	78.75	73.9
CDX79840	Canola	cytosol	79.06	73.76
Bra004730.1-P	Field mustard	cytosol	79.06	73.76
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	73.12	72.0
CDY42811	Canola	cytosol	69.38	71.84
EES07369	Sorghum	cytosol	74.06	71.39
Zm00001d051634_P001	Maize	cytosol	72.5	71.38
TraesCS6B01G308200.1	Wheat	plastid	75.62	58.31
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	75.31	58.21
TraesCS6A01G279400.1	Wheat	plastid	75.31	57.66
KRH69621	Soybean	plastid	69.06	54.17
KRH74537	Soybean	endoplasmic reticulum, plastid	68.75	53.92
KRH57590	Soybean	nucleus	23.75	19.34
KRH66354	Soybean	nucleus	24.06	19.06
KRH04308	Soybean	plastid	24.06	18.97
KRH48933	Soybean	plastid	23.44	18.66

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	EntrezGene:100814236	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	EMBL:ACUP02005311
EnsemblPlantsGene:GLYMA_08G309300	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165
GO:GO:0009987	GO:GO:0016740	UniProt:I1KY16	EnsemblPlants:KRH46053	ProteinID:KRH46053	ProteinID:KRH46053.1
PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34
InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniParc:UPI0002338B2F

Description

hypothetical protein

Coordinates

chr8:+:42830860..42835159

Molecular Weight (calculated)

35566.7 Da

IEP (calculated)

6.420

GRAVY (calculated)

0.117

Length

320 amino acids

Sequence
(BLAST)

001: MAMVKSPKKQ VNLFYSLDCE DLAQNVALQS PHIVLQNIKW RSFADGFPNI YINNAEELRG QHVAFLASFS SPAHVFEQLS VIYALPRLFV ASFTLVLPFF
101: PTGSFERMEE EGDVATAFTL ARMLSNIPIS RGGPTSLVIY DIHALQERFY FGDEVLPLFE TGIPLLKQRL SQLPDADNVV IAFPDDGAWK RFHKLFDNFS
201: LVVCTKVREG DKRIVRLKEG NVSGHHVVIV DDLVQSGGTL IECQKVLAAN GAAKVSAYVT HGVFPNQSWE RFTHKKDALE NAFAYFWITD SCPLTVKAVA
301: NTAPFEVLSL AGSIANALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.