Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000280.1-P | |
| Bra004730.1-P | |
| Bra029936.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42910.1 | Bra000280.1-P | AT2G42910.1 | 21798944 |
| AT2G42910.1 | Bra004730.1-P | AT2G42910.1 | 21798944 |
| AT2G42910.1 | Bra029936.1-P | AT3G49160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83511 | Canola | cytosol | 96.75 | 95.61 |
| CDY42811 | Canola | cytosol | 86.09 | 94.17 |
| AT2G42910.1 | Thale cress | cytosol | 92.6 | 92.88 |
| Bra004730.1-P | Field mustard | cytosol | 90.83 | 89.5 |
| PGSC0003DMT400054829 | Potato | cytosol | 78.11 | 83.54 |
| PGSC0003DMT400044713 | Potato | cytosol | 78.11 | 82.5 |
| Solyc10g007760.2.1 | Tomato | extracellular, nucleus, plastid | 78.4 | 82.3 |
| Solyc07g056330.2.1 | Tomato | cytosol, nucleus | 77.22 | 81.56 |
| VIT_12s0142g00090.t01 | Wine grape | cytosol | 78.4 | 81.29 |
| KRG98919 | Soybean | cytosol | 75.44 | 79.69 |
| KRH46053 | Soybean | cytosol, nucleus | 75.15 | 79.38 |
| Os02t0714600-01 | Rice | cytosol, extracellular, nucleus, plasma membrane | 75.44 | 78.46 |
| GSMUA_Achr8P25470_001 | Banana | cytosol, golgi, mitochondrion | 73.96 | 78.37 |
| GSMUA_Achr9P27600_001 | Banana | cytosol | 73.37 | 77.74 |
| Zm00001d017833_P001 | Maize | cytosol, extracellular, mitochondrion | 74.56 | 77.54 |
| Zm00001d051634_P001 | Maize | cytosol | 73.37 | 76.31 |
| EES07369 | Sorghum | cytosol | 73.67 | 75.0 |
| TraesCS6D01G259800.1 | Wheat | golgi, plastid, unclear | 73.37 | 59.9 |
| TraesCS6B01G308200.1 | Wheat | plastid | 73.08 | 59.52 |
| TraesCS6A01G279400.1 | Wheat | plastid | 73.37 | 59.33 |
| Bra019905.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 57.69 | 40.12 |
| Bra023263.1-P | Field mustard | plastid | 22.19 | 18.99 |
| Bra005344.1-P | Field mustard | plastid | 21.89 | 18.55 |
| Bra037645.1-P | Field mustard | plastid | 20.41 | 16.67 |
| Bra010159.1-P | Field mustard | plastid | 11.24 | 16.67 |
Protein Annotations
| KEGG:00030+2.7.6.1 | KEGG:00230+2.7.6.1 | Gene3D:3.40.50.2020 | MapMan:4.1.1.2.1 | EnsemblPlantsGene:Bra000280 | EnsemblPlants:Bra000280.1 |
| EnsemblPlants:Bra000280.1-P | GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004749 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009116 | GO:GO:0009165 |
| GO:GO:0009987 | GO:GO:0016740 | UniProt:M4C7V2 | PFAM:PF00156 | PFAM:PF13793 | InterPro:PRTase-like |
| InterPro:PRibTrfase_dom | PANTHER:PTHR10210 | PANTHER:PTHR10210:SF34 | InterPro:Pribosyltran_N | SMART:SM01400 | SUPFAM:SSF53271 |
| UniParc:UPI000253FCD1 | : | : | : | : | : |
Description
AT2G42910 (E=9e-185) | ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)
Coordinates
chrA03:+:10320504..10322172
Molecular Weight (calculated)
37708.4 Da
IEP (calculated)
6.508
GRAVY (calculated)
0.045
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENAANIME KNQAICKEAI VSELQKKKVH LFYCLECEEL ARNIASQSDH ITLQSINWRS FADGFPNLFI NNAHEIRGQH VAFLASFSSP AVIFEQISVI
101: YLLPRLFVAS FTLVLPFFPT GSFERMEEEG DVATAFTMAR IVSNIPISRG GPTSVVIYDI HALQERFYFA DQVLPLFETG IPLLTKRLQQ LPETEKVIVA
201: FPDDGAWKRF HKLLDQYPTV VCTKVREGDK RIVRLKEGNP AGCHVVIVDD LVQSGGTLIE CQKVLAAHGA AKVSAYVTHG VFPKNSWERF THKNNGLDEA
301: FAYFWITDSC PQTVKSIGNK APFEVLSLAG SIADALQI
101: YLLPRLFVAS FTLVLPFFPT GSFERMEEEG DVATAFTMAR IVSNIPISRG GPTSVVIYDI HALQERFYFA DQVLPLFETG IPLLTKRLQQ LPETEKVIVA
201: FPDDGAWKRF HKLLDQYPTV VCTKVREGDK RIVRLKEGNP AGCHVVIVDD LVQSGGTLIE CQKVLAAHGA AKVSAYVTHG VFPKNSWERF THKNNGLDEA
301: FAYFWITDSC PQTVKSIGNK APFEVLSLAG SIADALQI
001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
Arabidopsis Description
PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.