Factsheet for Bra004730.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000280.1-P
Bra004730.1-P
Bra029936.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	Bra000280.1-P	AT2G42910.1	21798944
AT2G42910.1	Bra004730.1-P	AT2G42910.1	21798944
AT2G42910.1	Bra029936.1-P	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79840	Canola	cytosol	100.0	100.0
AT2G42910.1	Thale cress	cytosol	90.38	91.99
Bra000280.1-P	Field mustard	cytosol	89.5	90.83
PGSC0003DMT400054829	Potato	cytosol	76.97	83.54
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	77.55	82.61
PGSC0003DMT400044713	Potato	cytosol	76.09	81.56
Solyc07g056330.2.1	Tomato	cytosol, nucleus	75.8	81.25
VIT_12s0142g00090.t01	Wine grape	cytosol	76.09	80.06
KRG98919	Soybean	cytosol	74.64	80.0
KRH46053	Soybean	cytosol, nucleus	73.76	79.06
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	74.05	78.15
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	73.47	77.54
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	72.01	77.43
GSMUA_Achr9P27600_001	Banana	cytosol	70.85	76.18
Zm00001d051634_P001	Maize	cytosol	72.01	76.0
EES07369	Sorghum	cytosol	72.01	74.4
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	72.89	60.39
TraesCS6B01G308200.1	Wheat	plastid	72.89	60.24
TraesCS6A01G279400.1	Wheat	plastid	72.89	59.81
Bra019905.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	57.14	40.33
Bra023263.1-P	Field mustard	plastid	21.57	18.73
Bra005344.1-P	Field mustard	plastid	21.57	18.55
Bra037645.1-P	Field mustard	plastid	20.41	16.91
Bra010159.1-P	Field mustard	plastid	11.08	16.67

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	EnsemblPlantsGene:Bra004730	EnsemblPlants:Bra004730.1
EnsemblPlants:Bra004730.1-P	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165
GO:GO:0009987	GO:GO:0016740	UniProt:M4CKJ5	PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like
InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400	SUPFAM:SSF53271
UniParc:UPI0002547A73	SEG:seg	:	:	:	:

Description

AT2G42910 (E=1e-181) | ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)

Coordinates

chrA05:+:1553623..1555463

Molecular Weight (calculated)

38263.9 Da

IEP (calculated)

6.348

GRAVY (calculated)

0.003

Length

343 amino acids

Sequence
(BLAST)

001: MSENAATNNN NNNIMEKNQI VKEAIVSELQ KKKVHLFYCL ECEELARNIA AESDHITLQS INWRSFADGF PNLFINNAHQ IRGQHVAFLA SFSSPAVIFE
101: QISVIYLLPR LFVASFTLVL PFFPTGSFER MEEEGDVATA FTMARIVSNI PISRGGPTSV VIYDIHALQE RFYFADQVLP LFETGIPLLT KRLQQIPETE
201: KVIVAFPDDG AWKRFHKLLD QYPTVVCTKV REGDKRIVRL KEGNPSGCHV VIVDDLVQSG GTLIECQKVL AAHGAAKVSA YVTHGVFPNS SWERFTHKNN
301: GVEEAFAYFW ITDSCPQTVK SIGNKAPFEV LSLAGSIADA LQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.