Factsheet for PGSC0003DMT400044713

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044713
PGSC0003DMT400050451
PGSC0003DMT400054829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	PGSC0003DMT400044713	AT2G42910.1	21798944
AT2G42910.1	PGSC0003DMT400054829	AT2G42910.1	21798944
AT2G42910.1	PGSC0003DMT400050451	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056330.2.1	Tomato	cytosol, nucleus	97.5	97.5
PGSC0003DMT400054829	Potato	cytosol	89.38	90.51
VIT_12s0142g00090.t01	Wine grape	cytosol	84.38	82.82
AT2G42910.1	Thale cress	cytosol	82.81	78.64
Bra000280.1-P	Field mustard	cytosol	82.5	78.11
CDX83511	Canola	cytosol	83.12	77.78
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	77.5	77.74
GSMUA_Achr9P27600_001	Banana	cytosol	77.5	77.74
KRG98919	Soybean	cytosol	77.19	77.19
CDY60199	Canola	cytosol	81.56	76.54
Bra004730.1-P	Field mustard	cytosol	81.56	76.09
CDX79840	Canola	cytosol	81.56	76.09
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	77.19	76.0
KRH46053	Soybean	cytosol, nucleus	75.94	75.94
CDY42811	Canola	cytosol	73.12	75.73
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	76.56	75.38
Zm00001d051634_P001	Maize	cytosol	75.31	74.15
EES07369	Sorghum	cytosol	75.62	72.89
PGSC0003DMT400035565	Potato	cytosol	26.25	66.14
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	74.06	57.25
TraesCS6B01G308200.1	Wheat	plastid	74.06	57.11
TraesCS6A01G279400.1	Wheat	plastid	74.06	56.7
PGSC0003DMT400056411	Potato	plastid	23.12	18.69
PGSC0003DMT400062265	Potato	plastid	23.12	18.64
PGSC0003DMT400068395	Potato	plastid	22.81	18.25

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	EntrezGene:102601048	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740
UniProt:M1BGK2	PFAM:PF00156	PFAM:PF13793	EnsemblPlantsGene:PGSC0003DMG400017346	PGSC:PGSC0003DMG400017346	EnsemblPlants:PGSC0003DMT400044713
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400
SUPFAM:SSF53271	TMHMM:TMhelix	UniParc:UPI0002953DC6	RefSeq:XP_006348954.1	:	:

Description

Ribose-phosphate pyrophosphokinase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400017346]

Coordinates

chr7:-:51127395..51132505

Molecular Weight (calculated)

35719.0 Da

IEP (calculated)

6.672

GRAVY (calculated)

0.063

Length

320 amino acids

Sequence
(BLAST)

001: MENGTLTKKQ VLLYYCVEME DVARKIASDS DCIHLHSINW RSFDDGFPNL FINKAHNIRG QHVAFLASFS SPAVIFEQLS VIFALPRLFV ASFTLVLPFF
101: PTGSFERMEE EGDVATAFTM ARILSNIPIS RGGPTSVVVY DIHALQERFY FGDQVLPLFE TGIPLLKQRL QQLPESEKIV IAFPDDGAWK RFYKQLGHYP
201: AVICTKVRED DKRIVRLKEG DPAGCHVVIV DDLVQSGGTL IECQKVLAAH GAAKVSAYVT HGVFPKRSWE QFLHKTDGSE KAFTYFWITD SCPVTVKAIA
301: NKAPFEVISL AGSIADALQT

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.