Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0142g00090.t01 | |
| VIT_16s0050g02660.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42910.1 | VIT_12s0142g00090.t01 | AT2G42910.1 | 21798944 |
| AT2G42910.1 | VIT_16s0050g02660.t01 | AT3G49160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054829 | Potato | cytosol | 83.74 | 86.39 |
| Solyc10g007760.2.1 | Tomato | extracellular, nucleus, plastid | 83.44 | 84.47 |
| PGSC0003DMT400044713 | Potato | cytosol | 82.82 | 84.38 |
| Solyc07g056330.2.1 | Tomato | cytosol, nucleus | 81.9 | 83.44 |
| GSMUA_Achr8P25470_001 | Banana | cytosol, golgi, mitochondrion | 80.67 | 82.45 |
| GSMUA_Achr9P27600_001 | Banana | cytosol | 79.75 | 81.5 |
| KRG98919 | Soybean | cytosol | 79.75 | 81.25 |
| KRH46053 | Soybean | cytosol, nucleus | 78.83 | 80.31 |
| Os02t0714600-01 | Rice | cytosol, extracellular, nucleus, plasma membrane | 78.83 | 79.08 |
| AT2G42910.1 | Thale cress | cytosol | 81.29 | 78.64 |
| Bra000280.1-P | Field mustard | cytosol | 81.29 | 78.4 |
| CDX83511 | Canola | cytosol | 81.6 | 77.78 |
| Zm00001d051634_P001 | Maize | cytosol | 76.99 | 77.23 |
| Zm00001d017833_P001 | Maize | cytosol, extracellular, mitochondrion | 76.69 | 76.92 |
| CDY60199 | Canola | cytosol | 80.37 | 76.83 |
| EES07369 | Sorghum | cytosol | 77.61 | 76.2 |
| CDX79840 | Canola | cytosol | 80.06 | 76.09 |
| Bra004730.1-P | Field mustard | cytosol | 80.06 | 76.09 |
| CDY42811 | Canola | cytosol | 71.17 | 75.08 |
| TraesCS6D01G259800.1 | Wheat | golgi, plastid, unclear | 76.99 | 60.63 |
| TraesCS6B01G308200.1 | Wheat | plastid | 76.99 | 60.48 |
| TraesCS6A01G279400.1 | Wheat | plastid | 77.3 | 60.29 |
| VIT_00s0225g00140.t01 | Wine grape | plastid | 70.86 | 58.78 |
| VIT_02s0012g00530.t01 | Wine grape | plastid | 21.78 | 17.88 |
| VIT_15s0021g00460.t01 | Wine grape | plastid | 21.78 | 17.62 |
Protein Annotations
| KEGG:00030+2.7.6.1 | KEGG:00230+2.7.6.1 | EntrezGene:100250562 | wikigene:100250562 | Gene3D:3.40.50.2020 | MapMan:4.1.1.2.1 |
| ProteinID:CCB56394 | ProteinID:CCB56394.1 | UniProt:F6HNY8 | EMBL:FN595999 | GO:GO:0000287 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004749 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009116 | GO:GO:0009165 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | EntrezGene:LOC100250562 | wikigene:LOC100250562 | PFAM:PF00156 | PFAM:PF13793 | InterPro:PRTase-like |
| InterPro:PRibTrfase_dom | PANTHER:PTHR10210 | PANTHER:PTHR10210:SF34 | InterPro:Pribosyltran_N | SMART:SM01400 | SUPFAM:SSF53271 |
| TIGR:TC71081 | UniParc:UPI0002107FF1 | ArrayExpress:VIT_12s0142g00090 | EnsemblPlantsGene:VIT_12s0142g00090 | EnsemblPlants:VIT_12s0142g00090.t01 | RefSeq:XP_002279775 |
| RefSeq:XP_002279775.2 | RefSeq:XP_010656932.1 | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:73527..82662
Molecular Weight (calculated)
36650.2 Da
IEP (calculated)
6.510
GRAVY (calculated)
0.034
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGVLRVME KPNEKQILLF YCMESEDLAR KVAEQSPLIQ LQSINWRSFD DGFPNLFINN AQYIRGQHVA FLASFSSPAV IFEQLSVIFA LPRLFVASFT
101: LVLPFFPTGS FERMEEEGDV ATAFTMARIL SNIPISRGGP TSLVIYDIHA LQERFYFSDH VLPLFETGIP LLKQRLHQLP DTDNVVVAFP DDGAWKRFHK
201: QLDHFPMVVC AKVREGDKRI VRLKEGNPAG CHVVIVDDLV QSGGTLIECQ KVLAAHGASK VSAYVTHSVF PKRSWERFIH KNDGSEKAFT YFWTTDSCPL
301: TVKAIGNRAP FEILSLAGSI ADALQI
101: LVLPFFPTGS FERMEEEGDV ATAFTMARIL SNIPISRGGP TSLVIYDIHA LQERFYFSDH VLPLFETGIP LLKQRLHQLP DTDNVVVAFP DDGAWKRFHK
201: QLDHFPMVVC AKVREGDKRI VRLKEGNPAG CHVVIVDDLV QSGGTLIECQ KVLAAHGASK VSAYVTHSVF PKRSWERFIH KNDGSEKAFT YFWTTDSCPL
301: TVKAIGNRAP FEILSLAGSI ADALQI
001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
Arabidopsis Description
PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.