Factsheet for VIT_16s0050g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g05070.t01
VIT_16s0050g02660.t01
VIT_19s0014g03060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49160.1	VIT_08s0007g05070.t01	AT2G36930.1	21798944
AT3G49160.1	VIT_19s0014g03060.t01	AT3G15420.1	21798944
AT3G49160.1	VIT_16s0050g02660.t01	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69935	Canola	cytosol	42.74	67.22
PGSC0003DMT400050451	Potato	plastid	57.65	57.8
Solyc06g051930.2.1	Tomato	plastid	57.39	57.54
AT3G49160.1	Thale cress	cytosol	51.72	55.21
CDX68515	Canola	mitochondrion	49.87	54.55
GSMUA_Achr7P10730_001	Banana	plastid	43.4	52.56
Bra029936.1-P	Field mustard	endoplasmic reticulum, vacuole	52.77	51.81
CDX83068	Canola	plastid	34.56	36.09
VIT_06s0004g00130.t01	Wine grape	cytosol	13.06	19.57
VIT_08s0007g07600.t01	Wine grape	cytosol, mitochondrion, plastid	12.8	19.4
VIT_10s0071g01060.t01	Wine grape	cytosol	12.8	19.02
VIT_08s0056g00190.t01	Wine grape	cytosol	12.8	19.02
VIT_05s0020g04480.t01	Wine grape	plastid	12.8	16.55
VIT_08s0007g05490.t01	Wine grape	cytosol	10.69	16.43
VIT_03s0088g00410.t01	Wine grape	plastid	12.4	16.4
VIT_16s0050g02180.t01	Wine grape	plastid	12.27	16.15
VIT_02s0012g01170.t01	Wine grape	plastid	12.01	15.91
VIT_00s0179g00350.t01	Wine grape	plastid	11.61	15.47
VIT_08s0007g04170.t01	Wine grape	plastid	10.03	14.79
VIT_13s0074g00210.t01	Wine grape	cytosol, plastid	10.16	14.61
VIT_08s0007g05430.t01	Wine grape	endoplasmic reticulum, extracellular	1.06	4.57

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	EntrezGene:100246758	wikigene:100246758	Gene3D:3.20.20.60
MapMan:35.1	ProteinID:CCB47756	ProteinID:CCB47756.1	UniProt:F6H6F4	EMBL:FN595243	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030955	EntrezGene:LOC100246758	wikigene:LOC100246758	PFAM:PF00224	PANTHER:PTHR11817	PANTHER:PTHR11817:SF28
InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf	InterPro:Pyrv_Knase_brl	SUPFAM:SSF50800	SUPFAM:SSF51621
UniParc:UPI000198578B	ArrayExpress:VIT_16s0050g02660	EnsemblPlantsGene:VIT_16s0050g02660	EnsemblPlants:VIT_16s0050g02660.t01	unigene:Vvi.15047	RefSeq:XP_002270689
RefSeq:XP_002270689.1	RefSeq:XP_010662568.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:19670053..19676443

Molecular Weight (calculated)

82848.0 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.069

Length

758 amino acids

Sequence
(BLAST)

001: MALGAISTCG GAKGSTLPNH AIRTANLSHS SSFMPSGNVG ALQFRLKVKK SVFRYQIFPL FMKEKGSLTP RTLVFAAQKE SDESESGSSQ SCIEDQMHMA
101: PEYNDGSRDP DVEVASITLS EADLSQSAVQ LGNQGNLLDK LKAVHLHILA MEQWNASRIK LCHRNYMASA TNLIHYLALK CLDVEQLKED LSSVGLLNLE
201: TINPCVIANL TAGIQMLENL KSYPLNIKEN ACGEISNKKS LDKQKKGEFI IDTMRKKASS NMKILLGPLA DERTAHIMVT VGQEVTENET LITDILKSGA
301: TIIRINCAHG NPSIWSEIIR RVRRSSQMLE KPCRILMDLA GPKLRTGNMK AGPCVIKISP KKNACGDIML PAQVWLCHKG ANPPAGHISP DAILSIDGQK
401: FLNKLQLGDT VRFRDARGKK RTLKICNRFP VFAGTAFMAE CNRTAYVQSG TGLYIKGQKH KSSVGEVVDV PAVEQFVRLR VGDLLIISLD SSIEQDELTQ
501: PTVDAYRVTC PSSFLFDSVK PGEPIAFDDG KIWGVIQGTS ASEIIVSITH ASPRGTKLGA EKSINIPESN IRFEGLTTKD LMDLEFVAAH ADMVGISFIR
601: DVRDIVVLRA ELEKRKLHNL GIVLKIETSS GFDKLPLLLL EAMKSPNPLG VMIARGDLAV ECGWERLGDI QEEILSICSA AHVPVIWATQ VLESLVKSGV
701: PTRAELTDVA NGRRASCIML NKGKHIVDAV STLDIILQGK STKMKAELKP LVLSSHLF

Best Arabidopsis Sequence Match ( AT3G49160.1 )
(BLAST)

001: MVGLDSSHLL RDKILCFSSR SHINNQHKKT SYALSLNHMK LPIQRTLAFA LARGKGEAES FSRLEATFGD NTSTECTWSF DFPDSKDAMS HLKSEADLSG
101: SNGANNVASV IEKLNALRSH LLAAEKWNAS QLHLCDSKYL ECATNLVHYM ALRSLDIEQL NSHLASLGLS SLDNNNLDVL AHLNASINLL MNDQNAVTES
201: WTNVYPKGKS TKKNDKGRVL SYKESLLGKL REGRSTHIMV TIGEEATLSE TFITDILKAG TSVIRINCAH GDPSIWGEII KRVRRTSQML EMPCRVHMDL
301: AGPKLRTGTL KPGPCVMKIS PKKDAYGNVV SPALVWLCLT GTEPPAHVSP DATISVQGQD FLAGLQIGDS IRLCDARGRK RRLKISKEFH VFNSTGFVAE
401: CFDTAYIESG TELSVKGKKG RRLVGRVVDV PPKESFVRLK VGDLLVITRE GSLDEPSVTV PGAHRLTCPS GYLFDSVKPG ETIGFDDGKI WGVIKGTSPS
501: EVIVSITHAR PKGTKLGSEK SINIPQSDIH FKGLTSKDIK DLDYVASHAD MVGISFIRDV HDITVLRQEL KKRKLDDLGI VLKIETKSGF KNLSLILLEA
601: MKCSNPLGIM IARGDLAVEC GWERLANMQE EIIAICKAAR VPVIMATQVL ESLVKSGVPT RAEITDAANA KRASCVMLNK GKNIVEAVSM LDTILHTKLI
701: YKKSDSENLH

Arabidopsis Description

PKP4Plastidial pyruvate kinase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.