CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX75003
CDX79705
CDX83068
CDX85505
CDY33207
CDY38110
CDY46745
CDY55578
CDY64675
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49160.1	CDX75003	AT2G36930.1	21798944
AT3G49160.1	CDX79705	AT2G36930.1	21798944
AT3G49160.1	CDY33207	AT2G36930.1	21798944
AT3G49160.1	CDY46745	AT2G36930.1	21798944
AT3G49160.1	CDX85505	AT3G15420.1	21798944
AT3G49160.1	CDY38110	AT3G15420.1	21798944
AT3G49160.1	CDY55578	AT3G15420.1	21798944
AT3G49160.1	CDY64675	AT3G15420.1	21798944
AT3G49160.1	CDX68515	AT3G49160.1	21798944
AT3G49160.1	CDX83068	AT3G49160.1	21798944
AT3G49160.1	CDY69935	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69935	Canola	cytosol	62.19	89.42
AT3G49160.1	Thale cress	cytosol	76.77	74.93
CDX83068	Canola	plastid	69.7	66.53
VIT_16s0050g02660.t01	Wine grape	plastid	54.55	49.87
PGSC0003DMT400050451	Potato	plastid	48.92	44.84
Solyc06g051930.2.1	Tomato	plastid	48.48	44.44
GSMUA_Achr7P10730_001	Banana	plastid	40.12	44.41
CDY42678	Canola	cytosol	3.32	25.84
CDY60038	Canola	cytosol	7.65	23.98
CDX81194	Canola	cytosol	7.22	23.26
CDY32790	Canola	cytosol	13.42	22.09
CDY46578	Canola	cytosol	13.42	22.09
CDY11933	Canola	cytosol, mitochondrion, plastid	13.28	21.2
CDY36795	Canola	endoplasmic reticulum	11.69	20.56
CDY27175	Canola	cytosol, mitochondrion	13.13	20.13
CDX84432	Canola	cytosol	14.29	20.08
CDY39852	Canola	cytosol	14.29	20.08
CDY41529	Canola	cytosol	14.29	20.08
CDY45309	Canola	plastid	8.95	19.94
CDY50878	Canola	cytosol	14.0	19.8
CDX78344	Canola	cytosol	14.0	19.68
CDY66490	Canola	cytosol	13.85	19.51
CDY66977	Canola	cytosol	13.85	19.51
CDY42900	Canola	cytosol	13.28	19.49
CDX81114	Canola	cytosol	13.85	19.47
CDX74201	Canola	cytosol	13.28	19.41
CDX92057	Canola	cytosol	13.28	19.41
CDY21551	Canola	cytosol	14.14	19.22
CDX69938	Canola	cytosol	14.14	19.22
CDY42677	Canola	cytosol	2.89	18.18
CDX72091	Canola	mitochondrion, plastid	11.4	17.14
CDY48872	Canola	plastid	14.0	16.99
CDY32285	Canola	plastid	13.85	16.81
CDY19645	Canola	plastid	14.0	16.7
CDY66652	Canola	plastid	13.85	16.55
CDY60911	Canola	plastid	13.71	16.38
CDX81195	Canola	cytosol	5.48	16.31
CDY60039	Canola	cytosol	5.48	16.31
CDY40829	Canola	plastid	13.13	15.77
CDY35484	Canola	plastid	13.13	15.77
CDX94878	Canola	plastid	13.13	15.66
CDX92969	Canola	plastid	12.99	15.65
CDX67554	Canola	cytosol, plastid	11.11	14.61
CDX78139	Canola	cytosol, plastid	11.11	14.61
CDX76243	Canola	cytosol, plastid	10.97	14.42
CDX73585	Canola	cytosol, plastid	10.97	14.42
CDY13321	Canola	cytosol, plastid	10.97	14.42
CDY58286	Canola	cytosol, plastid	10.82	14.23
CDY00607	Canola	cytosol	7.07	12.69
CDY04408	Canola	cytosol	1.44	10.75
CDY47408	Canola	cytosol	1.44	10.75
CDY26450	Canola	cytosol	1.44	10.75
CDY01123	Canola	cytosol	0.43	6.82
CDY42679	Canola	mitochondrion	0.29	1.74

Protein Annotations

KEGG:00010+2.7.1.40	KEGG:00230+2.7.1.40	KEGG:00620+2.7.1.40	Gene3D:3.20.20.60	MapMan:35.1	GO:A0A078BUV5
EnsemblPlants:CDX68515	ProteinID:CDX68515	ProteinID:CDX68515.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004743	GO:GO:0005488	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030955	EnsemblPlantsGene:GSBRNA2T00126048001	PFAM:PF00224	PANTHER:PTHR11817	PANTHER:PTHR11817:SF28	MetaCyc:PWY-1042
MetaCyc:PWY-2221	MetaCyc:PWY-5484	MetaCyc:PWY-5723	MetaCyc:PWY-6142	MetaCyc:PWY-6886	MetaCyc:PWY-6901
MetaCyc:PWY-7003	MetaCyc:PWY-7218	MetaCyc:PWY-7383	InterPro:Pyr_Knase	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	InterPro:Pyrv_Knase-like_insert_dom_sf
InterPro:Pyrv_Knase_brl	SUPFAM:SSF50800	SUPFAM:SSF51621	UniPathway:UPA00109	UniParc:UPI0004EEE8F2	SEG:seg

Description

BnaC01g25930D

Coordinates

chrLK031788:-:3120966..3127577

Molecular Weight (calculated)

76148.3 Da

IEP (calculated)

8.641

GRAVY (calculated)

-0.144

Length

693 amino acids

Sequence
(BLAST)

001: MWQGRQCGGL CSAPSVTNLW TTPNNVIQLA DMVSTESYHL LSGKKTLIFS LRPTKSFPLS LTQMKIRVPR TLAFASAKGK GKAESGVEAA IVGDNNTSTE
101: RNWSFDFPES KAEFCLVDSE AYQNLSSVLE KLNALRSHLL AAEKWNASRL QSCDSKYLEC ATNLIHYMAL RSLDTEQLNN YLASLGLSSL DNDNNLSVLS
201: NLDATINLLL KSPMESWKQQ KGNKIIEKND KGRVLSSYKE SYYLAGASVI RINCAHGDPT LWGEIIKRVR RTSQMLEMPC RILMDLAGPK LRTGTLKPGP
301: CVMKVSPKKD AYGNVASPAI VWLSVTETEP PAHLSPDATI FVQDQEFLAG LQIGDSVRLY DARGKKKKLR ISKEFDVFSS TGFVAECFDT AYVEPGTELC
401: VKGNKGRRLF GEVVDVPPKE SFVRLRVGDL LVITREGSFD EPSVTVPGAH RLTCPSGYLF DSVKPGETIG FDDGKIWGTI KGASPAEVIV SITHAGPKGT
501: KLGSEKSINI PQSDIRFKGL TSKDIKDLEY VASHADMVGI SFIRDVQDIT VLRQELKKRK LNDQLGVVLK IETESGFQNL PLILLEAMKC LNPLGVMIAR
601: GDLAVECGWE RLANLQEEIM AICKVARMPV ILATQVLESL VKSGVPTRAE ITDAANGRRA SCVMLNKGKH IVEAVSMLDT ILHTKLIYKK TGV

Best Arabidopsis Sequence Match ( AT3G49160.1 )
(BLAST)

001: MVGLDSSHLL RDKILCFSSR SHINNQHKKT SYALSLNHMK LPIQRTLAFA LARGKGEAES FSRLEATFGD NTSTECTWSF DFPDSKDAMS HLKSEADLSG
101: SNGANNVASV IEKLNALRSH LLAAEKWNAS QLHLCDSKYL ECATNLVHYM ALRSLDIEQL NSHLASLGLS SLDNNNLDVL AHLNASINLL MNDQNAVTES
201: WTNVYPKGKS TKKNDKGRVL SYKESLLGKL REGRSTHIMV TIGEEATLSE TFITDILKAG TSVIRINCAH GDPSIWGEII KRVRRTSQML EMPCRVHMDL
301: AGPKLRTGTL KPGPCVMKIS PKKDAYGNVV SPALVWLCLT GTEPPAHVSP DATISVQGQD FLAGLQIGDS IRLCDARGRK RRLKISKEFH VFNSTGFVAE
401: CFDTAYIESG TELSVKGKKG RRLVGRVVDV PPKESFVRLK VGDLLVITRE GSLDEPSVTV PGAHRLTCPS GYLFDSVKPG ETIGFDDGKI WGVIKGTSPS
501: EVIVSITHAR PKGTKLGSEK SINIPQSDIH FKGLTSKDIK DLDYVASHAD MVGISFIRDV HDITVLRQEL KKRKLDDLGI VLKIETKSGF KNLSLILLEA
601: MKCSNPLGIM IARGDLAVEC GWERLANMQE EIIAICKAAR VPVIMATQVL ESLVKSGVPT RAEITDAANA KRASCVMLNK GKNIVEAVSM LDTILHTKLI
701: YKKSDSENLH

Arabidopsis Description

PKP4Plastidial pyruvate kinase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.