Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85505 | Canola | cytosol | 100.0 | 100.0 |
| Bra023568.1-P | Field mustard | cytosol | 78.26 | 92.78 |
| CDY38110 | Canola | cytosol | 93.04 | 91.45 |
| CDY55578 | Canola | cytosol | 75.65 | 75.65 |
| AT1G80745.1 | Thale cress | cytosol | 63.48 | 71.57 |
| AT3G15420.1 | Thale cress | cytosol | 64.35 | 69.16 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 53.91 | 46.27 |
| PGSC0003DMT400003969 | Potato | cytosol | 53.91 | 45.26 |
| PGSC0003DMT400032421 | Potato | cytosol | 53.91 | 44.93 |
| KRH22122 | Soybean | cytosol | 46.96 | 40.0 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 50.43 | 39.73 |
| GSMUA_Achr11P... | Banana | cytosol | 36.52 | 30.22 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 35.65 | 29.08 |
| EER95620 | Sorghum | nucleus | 34.78 | 28.78 |
| Zm00001d027399_P001 | Maize | nucleus | 34.78 | 28.78 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 35.65 | 28.47 |
| Zm00001d048492_P001 | Maize | nucleus | 34.78 | 28.37 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 35.65 | 28.28 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 32.17 | 27.41 |
| Os04t0530000-01 | Rice | cytosol | 33.91 | 27.08 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 32.17 | 18.05 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 7.83 | 11.84 |
| KXG26700 | Sorghum | plastid | 22.61 | 11.5 |
Protein Annotations
| EnsemblPlants:CDY64675 | EnsemblPlantsGene:GSBRNA2T00042533001 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 | ProteinID:CDY64675 |
| ProteinID:CDY64675.1 | SEG:seg | UniParc:UPI0004EDDA1F | UniProt:A0A078D8G9 | MapMan:15.4.4.5 | : |
Description
BnaAnng19640DBnaA02g03080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D8G9]
Coordinates
chrLK034518:+:23897..24561
Molecular Weight (calculated)
12863.3 Da
IEP (calculated)
4.239
GRAVY (calculated)
-0.377
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDESVKVSK EEEEEYVLMD LDDVSRHIDI PPDAPYTLSG LDTLNPILTI DGKIKLVGEY LETIGTCLAF SDKEVAAAEY QTPRKTVEPV AKIHKILKFR
101: LALDNDDGET RPTTL
101: LALDNDDGET RPTTL
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.