Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G369300.1 | Wheat | cytosol | 70.37 | 67.38 |
| Os04t0530000-01 | Rice | cytosol | 68.15 | 63.89 |
| EER95620 | Sorghum | nucleus | 60.0 | 58.27 |
| Zm00001d027399_P001 | Maize | nucleus | 59.26 | 57.55 |
| Zm00001d048492_P001 | Maize | nucleus | 57.78 | 55.32 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 80.74 | 53.17 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 25.19 | 44.74 |
| GSMUA_Achr11P... | Banana | cytosol | 41.48 | 40.29 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 38.52 | 35.62 |
| KRH22122 | Soybean | cytosol | 33.33 | 33.33 |
| PGSC0003DMT400003969 | Potato | cytosol | 33.33 | 32.85 |
| PGSC0003DMT400032421 | Potato | cytosol | 33.33 | 32.61 |
| CDY38110 | Canola | cytosol | 28.15 | 32.48 |
| CDY64675 | Canola | cytosol | 27.41 | 32.17 |
| CDX85505 | Canola | cytosol | 27.41 | 32.17 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 31.11 | 31.34 |
| Bra023568.1-P | Field mustard | cytosol | 22.22 | 30.93 |
| CDY55578 | Canola | cytosol | 25.19 | 29.57 |
| AT1G80745.1 | Thale cress | cytosol | 22.22 | 29.41 |
| AT3G15420.1 | Thale cress | cytosol | 22.96 | 28.97 |
| KXG26700 | Sorghum | plastid | 45.19 | 26.99 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G466600.1 | EnsemblPlantsGene:TraesCS3D01G466600 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 | SEG:seg |
| MapMan:15.4.4.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:570036017..570037813
Molecular Weight (calculated)
15124.6 Da
IEP (calculated)
4.651
GRAVY (calculated)
-0.779
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MANEHERDKQ IGEEEEEEEY ALLELDGCLY SNIQPNAPYI LSGLDTLAPN LIVGDGMKMI GEYEETVGTY YLFSESNASP KPVHDHSAPP KVNKDKLGST
101: NKEGPSKEVK HLARVQKIIK FRSINEDHHE QSISA
101: NKEGPSKEVK HLARVQKIIK FRSINEDHHE QSISA
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.